PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10022781m
Common NameCICLE_v10022781mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family TALE
Protein Properties Length: 139aa    MW: 16121.2 Da    PI: 6.9458
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10022781mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox31.13.9e-10811152155
                      HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
         Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                      + +yp+++++  LA+++gL++rq+ +WF N+R ++
  Ciclev10022781m  81 NWPYPTEADKVALAESTGLDQRQINNWFINQRKRH 115
                      679*****************************985 PP
2ELK29.31.9e-103556122
              ELK  1 ELKhqLlrKYsgyLgsLkqEFs 22
                     E K+ L rKY+gy+++Lk+EFs
  Ciclev10022781m 35 ETKDNLIRKYGGYISTLKHEFS 56
                     789999***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512139.833555IPR005539ELK domain
PfamPF037895.5E-83556IPR005539ELK domain
SMARTSM011881.0E-53556IPR005539ELK domain
PROSITE profilePS5007112.69855118IPR001356Homeobox domain
SuperFamilySSF466891.03E-2056130IPR009057Homeodomain-like
SMARTSM003892.2E-1357122IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.1E-2860119IPR009057Homeodomain-like
CDDcd000864.01E-1367119No hitNo description
PfamPF059202.4E-1775114IPR008422Homeobox KN domain
PROSITE patternPS00027093116IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MLPHEADPGG SWEEDLSGGE TEVSECFRMP PVDRETKDNL IRKYGGYIST LKHEFSKKKK  60
KGKLPKEARQ ILFDWWNLHY NWPYPTEADK VALAESTGLD QRQINNWFIN QRKRHWKPSE  120
SVQFNLMDSV CGPIVIND*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: First detected in torpedo stage embryos at the boundaries between the presumptive SAM and the cotyledons. Later expressed between the cotyledons and the meristem, and between the cotyledons. In seedlings, localised in stipules and at the boundaries between the SAM and the emerging primordia. Expressed at the site of lateral roots. {ECO:0000269|PubMed:16798887}.
UniprotTISSUE SPECIFICITY: Expressed predominantly in shoot apices of seedlings, and, to a lower extent, in rosette leaves. {ECO:0000269|PubMed:11311158}.
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006439853.21e-97homeobox protein knotted-1-like 6
RefseqXP_024954213.12e-97homeobox protein knotted-1-like 6 isoform X1
SwissprotQ84JS67e-51KNAT6_ARATH; Homeobox protein knotted-1-like 6
TrEMBLV4VK371e-99V4VK37_9ROSI; Uncharacterized protein
STRINGXP_006439854.11e-100(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8352785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.26e-47KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]