PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10022734m
Common NameCICLE_v10022734mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 145aa    MW: 15934 Da    PI: 10.4694
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10022734mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.71.6e-1956105355
              AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr ++ +g+++AeIrd ++ng   r +lg+++t+e+Aa a+++a+ k++g
  Ciclev10022734m  56 YRGVRKRP-WGKFAAEIRDRKKNG--SRLWLGTYDTPEGAALAYDRAAFKMRG 105
                      9*******.**********77787..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.0E-3755119IPR001471AP2/ERF domain
PROSITE profilePS5103223.03755113IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-3155114IPR001471AP2/ERF domain
PfamPF008473.2E-1455105IPR001471AP2/ERF domain
CDDcd000181.69E-2955113No hitNo description
SuperFamilySSF541715.1E-2256114IPR016177DNA-binding domain
PRINTSPR003677.1E-145667IPR001471AP2/ERF domain
PRINTSPR003677.1E-1495115IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MEDCEALHDT VKEGWISFDQ LDGKSTPHAP PQAQASGFRL QKAATMTREI HVRVNYRGVR  60
KRPWGKFAAE IRDRKKNGSR LWLGTYDTPE GAALAYDRAA FKMRGSKAKL NFPSLIASNV  120
EPQPHGITKK NMASSSSSSS ITAD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2855118568ATERF1
3gcc_A2e-2855118568ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.56020.0abscission zone| fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitously expressed after ethylene treatment. {ECO:0000269|PubMed:11950980}.
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:11950980}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by wounding. Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1, but seems to not be affected by ethylene. Induction by salicylic acid (SA) is controlled by growth and/or developmental conditions, and seems to be more efficient and independent of PAD4 in older plants. {ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:12068110}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006445416.11e-105ethylene-responsive transcription factor 13
RefseqXP_006464433.11e-105ethylene-responsive transcription factor 13
SwissprotQ8L9K13e-35ERF99_ARATH; Ethylene-responsive transcription factor 13
TrEMBLA0A067H0Z31e-104A0A067H0Z3_CITSI; Uncharacterized protein
TrEMBLA0A2H5NNS81e-104A0A2H5NNS8_CITUN; Uncharacterized protein
TrEMBLV4U9051e-104V4U905_9ROSI; Uncharacterized protein
STRINGXP_006464433.11e-104(Citrus sinensis)
STRINGXP_006445416.11e-104(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.13e-37ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Maimbo M,Ohnishi K,Hikichi Y,Yoshioka H,Kiba A
    Induction of a small heat shock protein and its functional roles in Nicotiana plants in the defense response against Ralstonia solanacearum.
    Plant Physiol., 2007. 145(4): p. 1588-99
    [PMID:17965181]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]