PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10022249m

Common Name

CICLE_v10022249mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

FAR1

Protein Properties

Length: 210aa MW: 24125.7 Da PI: 9.4765

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10022249m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	85.4	8.8e-27	44	132	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY+eYA++vGF +r+ + ++s+r+g+i r++ C+keg+ + + k r++r++tr gCka+++vk +k+gkw++tk+++eHnH+l+ Ciclev10022249m 44 FYDEYARRVGFVMRVMSCRRSERDGRILARRLGCNKEGYCVSIRGKFGPVRKPRPSTREGCKAMIHVKFDKSGKWVITKFVKEHNHPLV 132 9************************************99999998**************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.5E-24	44	132	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
MDSDEGAGAV EGSAGRQLII FEGDSIREPC EGMEFDSEEA AKIFYDEYAR RVGFVMRVMS 60 CRRSERDGRI LARRLGCNKE GYCVSIRGKF GPVRKPRPST REGCKAMIHV KFDKSGKWVI 120 TKFVKEHNHP LVVAPREARQ TMDEKDKKIQ ELTVELRNKK RLCALYQEQL TTFMKVVEVH 180 SDHLSKKVQN VINNLKEFES IEKELSRNR*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006443015.1	1e-154	protein FAR1-RELATED SEQUENCE 5 isoform X1
Refseq	XP_024043383.1	1e-154	protein FAR1-RELATED SEQUENCE 5 isoform X2
Refseq	XP_024955241.1	1e-154	protein FAR1-RELATED SEQUENCE 5 isoform X1
Swissprot	Q9SZL8	2e-24	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A2H5QMM3	1e-153	A0A2H5QMM3_CITUN; Uncharacterized protein
STRING	XP_006478773.1	1e-151	(Citrus sinensis)
STRING	XP_006443015.1	1e-154	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3918	28	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	1e-109	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Ciclev10022249m
Entrez Gene	18046813

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]