PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10022068m | ||||||||
Common Name | CICLE_v10022068mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | LBD | ||||||||
Protein Properties | Length: 231aa MW: 24507.8 Da PI: 7.927 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 94.3 | 1.4e-29 | 4 | 106 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +C++C+vlr++C ++C ++p++ p+ q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +P+yG+vg++++++++l+q Ciclev10022068m 4 SCNGCRVLRKGCGENCSIRPCLqwiksPQCQANATLFLAKFYGRAGLVNLINAGPQDLRPAIFKSLLYEACGRIVNPIYGSVGLMWSGRWHLCQ 97 6*************************99****************************************************************** PP DUF260 90 lkaelallk 98 +++e++ ++ Ciclev10022068m 98 AAVEAVFRG 106 ***998766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 16.454 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 7.0E-24 | 4 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MRVSCNGCRV LRKGCGENCS IRPCLQWIKS PQCQANATLF LAKFYGRAGL VNLINAGPQD 60 LRPAIFKSLL YEACGRIVNP IYGSVGLMWS GRWHLCQAAV EAVFRGEPVT PLSSESALQA 120 GDIRHVSKDE SSAAAAAGSD KLHKVKSRRF KRSAPKPRSK PERAADAKVV EPLLDNSGGE 180 STSCDPELTQ RDSGEGDSVS VETVEATLAK TDGGADGSDV DLELSLGFGI * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ccl.8416 | 0.0 | fruit |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006440966.1 | 1e-169 | LOB domain-containing protein 41 | ||||
Swissprot | Q9M886 | 1e-78 | LBD41_ARATH; LOB domain-containing protein 41 | ||||
TrEMBL | A0A2H5PM53 | 1e-167 | A0A2H5PM53_CITUN; Uncharacterized protein | ||||
TrEMBL | V4TWE0 | 1e-167 | V4TWE0_9ROSI; Uncharacterized protein | ||||
STRING | XP_006440966.1 | 1e-168 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM18027 | 8 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 2e-77 | LOB domain-containing protein 41 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10022068m |
Entrez Gene | 18046218 |