PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10021952m | ||||||||
Common Name | CICLE_v10019979mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | C3H | ||||||||
Protein Properties | Length: 241aa MW: 26009.8 Da PI: 7.6869 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 27.8 | 4.4e-09 | 1 | 17 | 10 | 26 |
GGTS--TTTTT-SS-SS CS zf-CCCH 10 artGtCkyGdrCkFaHg 26 +r+G CkyG++C+F+H+ Ciclev10021952m 1 MRNGSCKYGANCRFNHP 17 89**************9 PP | |||||||
2 | zf-CCCH | 29.5 | 1.3e-09 | 128 | 154 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f+rtG Cky ++Ck++H++ Ciclev10021952m 128 PGQPECSYFLRTGDCKYKSNCKYHHPK 154 5789*********************96 PP | |||||||
3 | zf-CCCH | 34.6 | 3.3e-11 | 175 | 199 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ C++++r+G+Ck+G+ Ck+ H+ Ciclev10021952m 175 GQNVCSYYSRYGICKFGPACKYDHP 199 6678********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00642 | 1.4E-6 | 1 | 17 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 21 | 1 | 18 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.164 | 1 | 19 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.9E-4 | 2 | 16 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.314 | 127 | 155 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.3E-4 | 127 | 154 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.4E-7 | 129 | 154 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.15E-6 | 131 | 156 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.5E-4 | 133 | 153 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-6 | 171 | 199 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.0E-6 | 173 | 200 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.558 | 173 | 201 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.0E-8 | 175 | 199 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MRNGSCKYGA NCRFNHPDPT AVGGSDSPSG YGNGGSVSSQ APSQASIGSW SSPRALNEPA 60 PFVPMMYSPT PGVPSQNSEW NGYQSPLYPQ ERSVQSAPTY VINNNPLVDN VQIIHQPQML 120 VDEFPERPGQ PECSYFLRTG DCKYKSNCKY HHPKNRIPKS PPCTLSDKGL PLRPGQNVCS 180 YYSRYGICKF GPACKYDHPI HPDASAEYGL DPPPSFGDST TRQETGMAGT GNGNGSDKNI 240 * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ccl.2144 | 1e-119 | flower |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006440009.1 | 1e-176 | zinc finger CCCH domain-containing protein 67 isoform X1 | ||||
Refseq | XP_006440011.1 | 1e-177 | zinc finger CCCH domain-containing protein 43 isoform X2 | ||||
Swissprot | Q9STM4 | 5e-88 | C3H43_ARATH; Zinc finger CCCH domain-containing protein 43 | ||||
TrEMBL | V4SZH1 | 1e-176 | V4SZH1_9ROSI; Uncharacterized protein | ||||
TrEMBL | V4SZH5 | 1e-176 | V4SZH5_9ROSI; Uncharacterized protein | ||||
TrEMBL | V4TTN0 | 1e-176 | V4TTN0_9ROSI; Uncharacterized protein | ||||
TrEMBL | V4VKL3 | 1e-175 | V4VKL3_9ROSI; Uncharacterized protein | ||||
STRING | XP_006440009.1 | 1e-176 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48440.1 | 2e-90 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10021952m |
Entrez Gene | 18048472 |
Publications ? help Back to Top | |||
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