PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10021886m | ||||||||
Common Name | CICLE_v10021886mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | FAR1 | ||||||||
Protein Properties | Length: 248aa MW: 28584.9 Da PI: 6.32 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 82.3 | 8e-26 | 74 | 165 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr...traetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY+ Y+++vGF++r++++++s ++++i+ r++vCskeg+r+ + ++ + +r +r+ tr gC+a+l++ ++ gkw+++ +++eHnHel+p Ciclev10021886m 74 EFYEMYGRRVGFTIRNNRTRRSLKDNSIIGREYVCSKEGFRTGKCTN--RGSRvllPRPATREGCNAMLRIAAKDGGKWVIYGFVKEHNHELNP 165 6*****************************************99888..33333569**********************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 8.7E-23 | 74 | 165 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MGSTSGEQFD LGRNYRQWLA ETFDGHETGD DELSDHFNGS DNFIQPSDGM FPLTSEPTEP 60 YISMEFDSAE DAREFYEMYG RRVGFTIRNN RTRRSLKDNS IIGREYVCSK EGFRTGKCTN 120 RGSRVLLPRP ATREGCNAML RIAAKDGGKW VIYGFVKEHN HELNPSKIPP RRSHRIAFSE 180 DVKDLKIREL STELHHEKKK SAAYQEQLCM VLKFIEEHTQ RMSLKVQVVT NNMQELESEE 240 RESSYPD* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006443022.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5 isoform X1 | ||||
Refseq | XP_006478704.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like isoform X1 | ||||
Refseq | XP_006478705.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like isoform X1 | ||||
Refseq | XP_006478706.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like isoform X1 | ||||
Refseq | XP_006478708.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like isoform X1 | ||||
Refseq | XP_024045386.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5 isoform X1 | ||||
Refseq | XP_024045387.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5 isoform X1 | ||||
TrEMBL | V4TS59 | 0.0 | V4TS59_9ROSI; Uncharacterized protein | ||||
STRING | XP_006478704.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006443022.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM18086 | 8 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07500.1 | 7e-45 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10021886m |
Entrez Gene | 18046485 |