PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10021862m

Common Name

CICLE_v10021862mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

Dof

Protein Properties

Length: 250aa MW: 27664.5 Da PI: 8.6563

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10021862m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.6	6.6e-39	34	94	3	63
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 e+ l+cprC+st+tkfCyynnys sqPr+fCk+CrryWt+GG+lrnvPvGgg+rknk+sss Ciclev10021862m 34 ERVLNCPRCNSTDTKFCYYNNYSFSQPRHFCKTCRRYWTAGGSLRNVPVGGGSRKNKRSSS 94 67899****************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-21	25	82	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.2E-33	35	91	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.273	37	91	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	39	75	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MDTAYHWPQG IGFVTPMEAG SNPTLERRPK PQRERVLNCP RCNSTDTKFC YYNNYSFSQP 60 RHFCKTCRRY WTAGGSLRNV PVGGGSRKNK RSSSSSGLSM NLTDLNTPCF PDQSAVSSDH 120 NPNSTIHHEY HRDLKLAYPP NYTESKISSS SSASSSEFNS FMGMPAAASN SNANATCQSG 180 NILLQEPKKT LDFSSSDGFE NNGARLWFPL QDIKPEISNT TTDRFELNRG QAQAESTGYW 240 TRLLGGGSW*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006441159.1	0.0	dof zinc finger protein DOF4.6
Refseq	XP_006491972.1	0.0	dof zinc finger protein DOF4.6-like isoform X1
TrEMBL	A0A2H5Q703	0.0	A0A2H5Q703_CITUN; Uncharacterized protein
TrEMBL	V4VND3	0.0	V4VND3_9ROSI; Uncharacterized protein
STRING	XP_006491972.1	0.0	(Citrus sinensis)
STRING	XP_006441159.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM33106	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64620.1	2e-29	Dof family protein

Link Out ? help Back to Top
Phytozome	Ciclev10021862m
Entrez Gene	18049610