PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Ciclev10021846m | ||||||||
Common Name | CICLE_v10021846mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 251aa MW: 28708.7 Da PI: 8.1174 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 93.7 | 2.2e-29 | 89 | 177 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY+eYA+++GFs+r+ +s+ks+r+g+i++r++ C+keg++++++k+ + + r+r++ r gC+a++ vk+ek g+w+vtk+e+eHnH l Ciclev10021846m 89 FYDEYARRAGFSTRIISSRKSERDGSIISRHLACNKEGFNANRRKSGRVQIRKRESIREGCRAMILVKREKPGRWVVTKFEKEHNHLLL 177 9*********************************************99999***********************************985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.7E-26 | 89 | 177 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 251 aa Download sequence Send to blast |
MTAIGLHSYI LRGYFLGVKL FFKLLYVVFS SYYCFSVDLE APAEETPAEE KTVITESPTG 60 GESDVCEIDT RREPYEGMVF ESEDAAKIFY DEYARRAGFS TRIISSRKSE RDGSIISRHL 120 ACNKEGFNAN RRKSGRVQIR KRESIREGCR AMILVKREKP GRWVVTKFEK EHNHLLLSSG 180 KDGPSPDEKD RKIRELSMEL HRANQKLEAC QEQLQIVMSY IEEHAKCLSK TVEEAVKDIQ 240 KVESGKQKEP * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006443020.1 | 1e-155 | protein FAR1-RELATED SEQUENCE 5 | ||||
Refseq | XP_006478710.1 | 1e-155 | protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | V4U296 | 0.0 | V4U296_9ROSI; Uncharacterized protein | ||||
STRING | XP_006443021.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM19294 | 7 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G43280.1 | 3e-50 | FAR1 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Ciclev10021846m |
Entrez Gene | 18046815 |