PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10021843m | ||||||||
Common Name | CICLE_v10021843mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | LBD | ||||||||
Protein Properties | Length: 251aa MW: 27444.7 Da PI: 6.7863 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 126 | 1.8e-39 | 40 | 141 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C aCk+lrrkC+++C++ap+f ++q +++fa+vhk+FGasnv+kll ++p ++r+da+ ++ yeA+ar++dPvyG+v++il+lqqq+++l+ae Ciclev10021843m 40 PCGACKFLRRKCVSGCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLLHIPVNRRQDAVVTISYEAQARLSDPVYGCVSTILALQQQVASLQAE 133 7***********************9989****************************************************************** PP DUF260 94 lallkeel 101 l +++++l Ciclev10021843m 134 LTMVQNQL 141 ****9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.084 | 39 | 141 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.2E-39 | 40 | 138 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:1900150 | Biological Process | regulation of defense response to fungus |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MAEQQPDPIS EPRRRGAGKR ATTAPSPEAE PMSAPAPAAP CGACKFLRRK CVSGCIFAPH 60 FGSDQGAARF AAVHKVFGAS NVSKLLLHIP VNRRQDAVVT ISYEAQARLS DPVYGCVSTI 120 LALQQQVASL QAELTMVQNQ LLNSRFAMAN ALQTSQQPQQ PQHVALLHQQ QQQPAYSNSS 180 SASTNFINMS NLTSNFDFAA ETVLSCHSME PLHELSRPAH DDEDDEEESQ IPIMFTNDHH 240 QILHNHRRTN * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 8e-38 | 33 | 147 | 4 | 115 | LOB family transfactor Ramosa2.1 |
5ly0_B | 8e-38 | 33 | 147 | 4 | 115 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots and flowers. {ECO:0000269|PubMed:12068116}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006443492.1 | 0.0 | LOB domain-containing protein 20 | ||||
Refseq | XP_006479165.1 | 0.0 | LOB domain-containing protein 20 | ||||
Swissprot | Q9SRV3 | 2e-77 | LBD20_ARATH; LOB domain-containing protein 20 | ||||
TrEMBL | V4TTG5 | 0.0 | V4TTG5_9ROSI; Uncharacterized protein | ||||
STRING | XP_006479165.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006443492.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM108 | 28 | 359 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03760.1 | 5e-64 | LOB domain-containing protein 20 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10021843m |
Entrez Gene | 18050183 |