PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10021740m
Common NameCICLE_v10021740mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 263aa    MW: 28442.6 Da    PI: 8.1471
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10021740mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.76e-1873123155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      ++y+GVr ++ +g+Wv+eIr+p++   + r++lg++  +e+Aa+a++ a+++++g
  Ciclev10021740m  73 CCYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTYPIPEMAARAHDVAALAIKG 123
                      78*****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.2E-1273123IPR001471AP2/ERF domain
PROSITE profilePS5103222.5574131IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-2074132IPR016177DNA-binding domain
SMARTSM003801.7E-3474137IPR001471AP2/ERF domain
CDDcd000181.28E-3175131No hitNo description
PRINTSPR003675.9E-97586IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.8E-3075132IPR001471AP2/ERF domain
PRINTSPR003675.9E-997113IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MAKNINNINE NASLDILRSS SNSAAGGAAS SSSSSSCSES PTKKPSNNIN INCRREKKKA  60
QNGKHRTCSS TGCCYRGVRM RSWGKWVSEI REPRKKSRIW LGTYPIPEMA ARAHDVAALA  120
IKGRSAFLNF PLLAHQLPSP LSKSPKDIQA AAAEAAAAFQ AEPDPLQLPH VRVLSSSSNS  180
NTTTGTTSLL SSDSTNVNTQ ELTSSPNDSL HLHHRDDDDA FFDLPDLFIN GSDHLGGGFC  240
SYLSTSVDTG FRLEEPFLWE YQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1566131672Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00312DAPTransfer from AT2G44940Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006445373.10.0ethylene-responsive transcription factor ERF039
RefseqXP_006464460.10.0ethylene-responsive transcription factor ERF039
SwissprotQ8LBQ79e-52ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A067H3S90.0A0A067H3S9_CITSI; Uncharacterized protein
TrEMBLA0A2H5NP810.0A0A2H5NP81_CITUN; Uncharacterized protein
TrEMBLV4TE460.0V4TE46_9ROSI; Uncharacterized protein
STRINGXP_006464460.10.0(Citrus sinensis)
STRINGXP_006445373.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.16e-40ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]