PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10021571m
Common NameCICLE_v10021571mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB
Protein Properties Length: 281aa    MW: 31525.9 Da    PI: 8.5795
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10021571mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.64.5e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+ Ed ll ++++ +G g+W++ +++ g+ R++k+c++rw +yl
  Ciclev10021571m 14 RGPWTPREDTLLTEYIQVHGEGHWRSLPKKAGLLRCGKSCRLRWMNYL 61
                     89******************************99************97 PP
2Myb_DNA-binding53.65.2e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ T++Ed+l+++++ +lG++ W++Ia +++ gRt++++k++w+++l
  Ciclev10021571m  67 RGNITPDEDDLIIRLHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 112
                      7999******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.71961IPR017930Myb domain
SuperFamilySSF466894.4E-3011108IPR009057Homeodomain-like
SMARTSM007173.1E-121363IPR001005SANT/Myb domain
PfamPF002493.2E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.7E-241568IPR009057Homeodomain-like
CDDcd001675.45E-101661No hitNo description
PROSITE profilePS5129426.81762116IPR017930Myb domain
SMARTSM007172.1E-1666114IPR001005SANT/Myb domain
PfamPF002491.8E-1567112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-2669116IPR009057Homeodomain-like
CDDcd001672.70E-1271112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MGRAPCCSKV GLQRGPWTPR EDTLLTEYIQ VHGEGHWRSL PKKAGLLRCG KSCRLRWMNY  60
LRPDIKRGNI TPDEDDLIIR LHSLLGNRWS LIAGRLPGRT DNEIKNYWNT HLSKRLRVQG  120
TDPNTHKKLS EPSLVQDGII KKRRRISKTE AEAAAAAASP VEPTGKHKLH LPKPIRVTTT  180
YLLPRNESFA RTTFSQGGEG VLAAHVLEEV PSYSLKDGDD GAAGFLVADH HLVNGSDFEC  240
QSQIFPGENS LEKLYEEYLQ ILKNDDEQLQ LDCFAESLLK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-251211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1141145KRRRI
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Siliques. {ECO:0000269|PubMed:9839469}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006444806.10.0transcription repressor MYB6
RefseqXP_006491310.10.0transcription repressor MYB6
SwissprotQ388502e-68MYB5_ARATH; Transcription repressor MYB5
TrEMBLA0A067HEW30.0A0A067HEW3_CITSI; Uncharacterized protein
TrEMBLA0A2H5P0430.0A0A2H5P043_CITUN; Uncharacterized protein
TrEMBLV4U7920.0V4U792_9ROSI; Uncharacterized protein
STRINGXP_006491310.10.0(Citrus sinensis)
STRINGXP_006444806.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.18e-70myb domain protein 3
Publications ? help Back to Top
  1. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]