PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10021479m | ||||||||
Common Name | CICLE_v10021479mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | MYB | ||||||||
Protein Properties | Length: 290aa MW: 33048.3 Da PI: 6.3984 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60.2 | 4.4e-19 | 26 | 73 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd ll ++v+ +G g+W+++a+ g++Rt+k+c++rw++yl Ciclev10021479m 26 KGPWTVEEDSLLMNYVAIHGEGRWNAVASSAGLNRTGKSCRLRWLNYL 73 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 46.8 | 6.9e-15 | 79 | 122 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T +E++ +++++ ++G++ W++Ia++++ gRt++++k++w++ Ciclev10021479m 79 RGNITLQEQLMILELHSRWGNR-WSKIAQYLP-GRTDNEIKNYWRT 122 7899******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 23.659 | 21 | 77 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.0E-32 | 23 | 120 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.1E-16 | 25 | 75 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.3E-18 | 26 | 73 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-23 | 27 | 80 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.66E-11 | 28 | 73 | No hit | No description |
SMART | SM00717 | 2.2E-13 | 78 | 126 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 17.003 | 78 | 128 | IPR017930 | Myb domain |
Pfam | PF00249 | 9.1E-14 | 79 | 122 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.0E-22 | 81 | 127 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.26E-9 | 83 | 122 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 290 aa Download sequence Send to blast |
MDAHVGGFSS GNHRQQSEEA ILGVRKGPWT VEEDSLLMNY VAIHGEGRWN AVASSAGLNR 60 TGKSCRLRWL NYLRPDVRRG NITLQEQLMI LELHSRWGNR WSKIAQYLPG RTDNEIKNYW 120 RTRVQKHAKQ LKCDVNSKQF RDAMRFVWVP RLIERIQAQS DSNSSGQPTS STTTCTDNST 180 TTNHADLATS QVSDSRPDPS FRADISGAQV YPESDLNDSY NLHSDWNYSQ NGLDNACESW 240 GWSKPGSDTQ GFEQQIQNNN WLGCGDSLES LWNEENIWFL RQQLYDDKV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 2e-24 | 26 | 120 | 4 | 97 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 7e-24 | 26 | 126 | 58 | 157 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 7e-24 | 26 | 126 | 58 | 157 | MYB PROTO-ONCOGENE PROTEIN |
1h8a_C | 3e-24 | 26 | 120 | 27 | 120 | MYB TRANSFORMING PROTEIN |
1mse_C | 2e-24 | 26 | 120 | 4 | 97 | C-Myb DNA-Binding Domain |
1msf_C | 2e-24 | 26 | 120 | 4 | 97 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006444559.1 | 0.0 | transcription factor MYB78 | ||||
TrEMBL | A0A2H5NXN7 | 0.0 | A0A2H5NXN7_CITUN; Uncharacterized protein | ||||
TrEMBL | V4VWU3 | 0.0 | V4VWU3_9ROSI; Uncharacterized protein | ||||
STRING | XP_006444559.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G48000.1 | 8e-81 | myb domain protein 112 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10021479m |
Entrez Gene | 18049953 |