PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10021312m
Common NameCICLE_v10021312mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 307aa    MW: 35107.1 Da    PI: 5.4012
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10021312mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM162.12.1e-50101381129
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGfrF P+deelv++yL kk++++++    ++ e+d++++ePw+Lp+ +k + +ewyfFs rd+kyatg r+nrat+sgyWkatgkd++v++
  Ciclev10021312m  10 LPPGFRFYPSDEELVCHYLYKKIANEEVLK-GTLVEIDLHTCEPWQLPEVAKLNASEWYFFSFRDRKYATGFRTNRATTSGYWKATGKDRTVID 102
                      79*************************655.78***************87788899************************************** PP

              NAM  95 k.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                        ++elvg++ktLvfy++rap+g kt W+mhe+rle
  Ciclev10021312m 103 PmTRELVGMRKTLVFYRNRAPNGIKTGWIMHEFRLE 138
                      988899***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-608156IPR003441NAC domain
PROSITE profilePS5100557.67610156IPR003441NAC domain
PfamPF023651.8E-2711137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MGLRDIGATL PPGFRFYPSD EELVCHYLYK KIANEEVLKG TLVEIDLHTC EPWQLPEVAK  60
LNASEWYFFS FRDRKYATGF RTNRATTSGY WKATGKDRTV IDPMTRELVG MRKTLVFYRN  120
RAPNGIKTGW IMHEFRLETP HMPPKEDWVL CRVFHKSKGE NSENLSPQFI YESAANNNAS  180
SFTPSAASPP TADCRMINMP FGYHQQQHIS SSAPGSYRNH NNQSSNSMLN LLQFPTSQDQ  240
KNNNKNQSND IISSKSNDDD YGFIWEMEMD LQENCCSLEN DDNNGGVASN LEDDMRFELD  300
NSMVFL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-47915616165NO APICAL MERISTEM PROTEIN
1ut4_B2e-47915616165NO APICAL MERISTEM PROTEIN
1ut7_A2e-47915616165NO APICAL MERISTEM PROTEIN
1ut7_B2e-47915616165NO APICAL MERISTEM PROTEIN
3swm_A3e-47915619168NAC domain-containing protein 19
3swm_B3e-47915619168NAC domain-containing protein 19
3swm_C3e-47915619168NAC domain-containing protein 19
3swm_D3e-47915619168NAC domain-containing protein 19
3swp_A3e-47915619168NAC domain-containing protein 19
3swp_B3e-47915619168NAC domain-containing protein 19
3swp_C3e-47915619168NAC domain-containing protein 19
3swp_D3e-47915619168NAC domain-containing protein 19
4dul_A2e-47915616165NAC domain-containing protein 19
4dul_B2e-47915616165NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in the root tip and in lateral root initiation sites. Also detected in expanding cotyledon, and in leaf primordia. {ECO:0000269|PubMed:11114891}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006443820.10.0NAC domain-containing protein 21/22
RefseqXP_006479521.10.0NAC domain-containing protein 21/22
SwissprotQ84TE65e-64NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLV4TZ660.0V4TZ66_9ROSI; Uncharacterized protein
STRINGXP_006479521.10.0(Citrus sinensis)
STRINGXP_006443820.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34362862
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.16e-93NAC domain containing protein 74
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]