PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10021285m
Common NameCICLE_v10021285mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 310aa    MW: 34245.2 Da    PI: 6.3687
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10021285mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.97e-20154204255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+++AeIrdp+ +g   r++lg+f+ta eAa+a+++a+ +l+g
  Ciclev10021285m 154 HYRGVRRRP-WGKYAAEIRDPTRRG--VRVWLGTFDTAIEAARAYDRAAFQLRG 204
                      8********.**********97665..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.73E-31153212No hitNo description
Gene3DG3DSA:3.30.730.106.6E-32153213IPR001471AP2/ERF domain
SuperFamilySSF541713.86E-23154213IPR016177DNA-binding domain
PROSITE profilePS5103224.526154212IPR001471AP2/ERF domain
PfamPF008479.2E-14154204IPR001471AP2/ERF domain
SMARTSM003807.0E-36154218IPR001471AP2/ERF domain
PRINTSPR003671.8E-10155166IPR001471AP2/ERF domain
PRINTSPR003671.8E-10178194IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0001944Biological Processvasculature development
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009644Biological Processresponse to high light intensity
GO:0010200Biological Processresponse to chitin
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MATPIEKSAL EFIEQHLFGE NSPIAGFSSS LSSDTCSQSQ TSSSASSDRS FFNDAVFFDY  60
ESKPQIIDLV TPQPTNTCSE LTNDFFEFDI RPQIQSQPSN CSSEFEPKPK ISPNSSSQSS  120
RKPSLKISVP KKAEGHHFTN RKSKAKPESS EEKHYRGVRR RPWGKYAAEI RDPTRRGVRV  180
WLGTFDTAIE AARAYDRAAF QLRGSKAILN FPLEAGKCDS NAAVARECDS SAEAGACETK  240
RKRDCESEEE ERKAKVVKTE SADTVNEFPL TPASCAAFWD LHLDWDCGVK GIFNAPLLSP  300
LSPQPLMVL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A9e-29153213161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.50150.0fruit| leaf
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00437DAPTransfer from AT4G17490Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6988350.0HQ698835.1 Citrus medica var. sarcodactylis ethylene-responsive element binding factor 6 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006440235.10.0ethylene-responsive transcription factor 6
TrEMBLA0A067FCZ10.0A0A067FCZ1_CITSI; Uncharacterized protein (Fragment)
TrEMBLV4TP390.0V4TP39_9ROSI; Uncharacterized protein
STRINGXP_006440235.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17490.14e-36ethylene responsive element binding factor 6