PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10021265m
Common NameCICLE_v10021265mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 313aa    MW: 34498.8 Da    PI: 8.1817
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10021265mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.22.1e-18111161256
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                       y+GVr+++ +g+WvAeIr p +   r r++lg++++ae Aa a+++a+ kl+ge
  Ciclev10021265m 111 LYRGVRQRH-WGKWVAEIRLPQN---RMRVWLGTYDSAEAAAYAYDRAAYKLRGE 161
                      59******9.**********954...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.33E-17110170No hitNo description
SMARTSM003803.3E-36111174IPR001471AP2/ERF domain
SuperFamilySSF541713.47E-22111168IPR016177DNA-binding domain
PROSITE profilePS5103223.09111168IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-30111169IPR001471AP2/ERF domain
PfamPF008478.5E-13112161IPR001471AP2/ERF domain
PRINTSPR003671.8E-12112123IPR001471AP2/ERF domain
PRINTSPR003671.8E-12150170IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MEGFQENNQP FAFNDGADIR SSLSQLILTG GTNTIDSIFS RCTPTSTMSS PAFEPLGSSV  60
YLRQRDLLQK FSEENKTTNT TLARNYLTNI PLQNCAYTSS STCIAPPKKK LYRGVRQRHW  120
GKWVAEIRLP QNRMRVWLGT YDSAEAAAYA YDRAAYKLRG EYARLNFPNL KDPSKLGFGD  180
CSKLNALKSA VDAKIQAICQ KVKRERAKKS AKRSCILSDG GSKVGSETES EKVEKVVDSC  240
SSSSTMSPLI FGDGDLVSPT VSEDGFWKGE NSQTSVSTEH PMTTTVESDF EGCSLARLPS  300
YDPELIWEVL AN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-20110168160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A5e-20108168263ATERF1
3gcc_A5e-20108168263ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006439361.10.0ethylene-responsive transcription factor ERF061
SwissprotQ9C7W23e-74ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLV4TRS10.0V4TRS1_9ROSI; Uncharacterized protein
STRINGXP_006439361.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41742551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.12e-61ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]