PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10021150m
Common NameCICLE_v10021157mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB
Protein Properties Length: 325aa    MW: 37010.7 Da    PI: 6.444
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10021150mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.23.4e-172370148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd ll++++ ++  g+W++ a++ g++Rt+k+c++rw++yl
  Ciclev10021150m 23 RGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYL 70
                     89********************************************97 PP
2Myb_DNA-binding48.71.7e-1576119146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T++E+  +++++ ++G++ W++Ia++++ gRt++++k++w++
  Ciclev10021150m  76 RGNLTPQEQMSILELHSKWGNR-WSKIAQHLP-GRTDNEIKNYWRT 119
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.9731870IPR017930Myb domain
SuperFamilySSF466891.55E-2921117IPR009057Homeodomain-like
SMARTSM007175.4E-152272IPR001005SANT/Myb domain
PfamPF002491.0E-152370IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-222477IPR009057Homeodomain-like
CDDcd001673.92E-112570No hitNo description
PROSITE profilePS5129423.47771125IPR017930Myb domain
SMARTSM007175.7E-1475123IPR001005SANT/Myb domain
PfamPF002491.6E-1476119IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-2378124IPR009057Homeodomain-like
CDDcd001671.33E-1080119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MSSFSKSSTS SIYGENDSDQ LRRGPWTLEE DTLLIQYISR HSEGRWNLLA KRSGLKRTGK  60
SCRLRWLNYL KPDVKRGNLT PQEQMSILEL HSKWGNRWSK IAQHLPGRTD NEIKNYWRTR  120
VQKQARHLKI DANSTTFQEI IRCFWMPRLL QKMDTSSSSS PSALSQNPTI NSQPFDHAFH  180
HQGSASAQII SHQVPYDRGV IDHQELNSSS DSEHGIGTST SCISSSESMN FSQVSQFSEY  240
PTGGDHFHAS NNDSSEYNTF AKDFCQFDSN CYDMENISQP ETMPAPLAGD FNNWVQEYDL  300
VDNMWGAWMN FGNSGTHADI NEFN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-25201241104MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.66770.0abscission zone
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006440994.10.0transcription factor MYB62
TrEMBLA0A067EQS00.0A0A067EQS0_CITSI; Uncharacterized protein
TrEMBLA0A2H5PM020.0A0A2H5PM02_CITUN; Uncharacterized protein
TrEMBLV4TRA60.0V4TRA6_9ROSI; Uncharacterized protein
STRINGXP_006440994.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26322571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25340.19e-76myb domain protein 116