PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10021132m
Common NameCICLE_v10021132mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 328aa    MW: 36108.6 Da    PI: 4.8286
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10021132mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.93.4e-20198248255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr ++ +g+++AeIrdp++ng  +r++lg+++t+e+Aa a+++a+ +++g
  Ciclev10021132m 198 HYRGVRTRP-WGKYAAEIRDPKKNG--ARVWLGTYDTPEGAALAYDKAAFEMRG 248
                      6*****999.***********9998..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.406198256IPR001471AP2/ERF domain
PfamPF008476.7E-14198248IPR001471AP2/ERF domain
SMARTSM003806.8E-39198262IPR001471AP2/ERF domain
SuperFamilySSF541714.25E-22198257IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.6E-31198257IPR001471AP2/ERF domain
CDDcd000181.49E-30198258No hitNo description
PRINTSPR003679.3E-13199210IPR001471AP2/ERF domain
PRINTSPR003679.3E-13238258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MYSESISQTD MALLESIRHH LLDDDFEDIN SMMQPLQVED VNSSILQQHQ HQQQQQQQQM  60
PLENFSESDF DLLQNLLEDV NTASSFESDY LNNAPSVYSP TSSFGSAVFD FPLQVTGNVV  120
INNNNNYPIP SYGCYDHPKA LNDAVDSVGW ISFDHHQADQ DDQAISEAAA AAATLDMVTY  180
HQTAGLAARD RDQAKVVHYR GVRTRPWGKY AAEIRDPKKN GARVWLGTYD TPEGAALAYD  240
KAAFEMRGSK AKLNFPHLLG RVNFKPVRVN TTNTTKRGSP ESEPELSPTS SSSSSSSSTS  300
SSSSLLMLPE DSPKPKRRNN NGTSAVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-30198256260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-30194256163ATERF1
3gcc_A3e-30194256163ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006445413.10.0ethylene-responsive transcription factor 2
TrEMBLV4TEA00.0V4TEA0_9ROSI; Uncharacterized protein
STRINGXP_006464434.10.0(Citrus sinensis)
STRINGXP_006445413.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.13e-39ethylene-responsive element binding factor 13