PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10021117m | ||||||||
Common Name | CICLE_v10021117mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | NAC | ||||||||
Protein Properties | Length: 328aa MW: 36926.7 Da PI: 8.3696 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 168.1 | 3e-52 | 18 | 143 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhP+d+elv++yL kkv++++ ++ ++ vd++k+ePwd+p+++ + kewyf+s+rd+kyatg r+nrat+sgyWkatgkd+++l+ Ciclev10021117m 18 LPPGFRFHPRDDELVCDYLMKKVTHTNESI--LLAAVDLNKCEPWDIPETACVGGKEWYFYSQRDRKYATGLRTNRATASGYWKATGKDRAILR 109 79**********************999666..79**************7777799**************************************9 PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrle 129 kg+lvg++ktLvfy+grapkg+kt+Wvmhe+rle Ciclev10021117m 110 -KGSLVGMRKTLVFYRGRAPKGKKTEWVMHEFRLE 143 .999****************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.75E-59 | 10 | 170 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.75 | 18 | 170 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.7E-27 | 19 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
MSSSNNSNNN IRMVEAQLPP GFRFHPRDDE LVCDYLMKKV THTNESILLA AVDLNKCEPW 60 DIPETACVGG KEWYFYSQRD RKYATGLRTN RATASGYWKA TGKDRAILRK GSLVGMRKTL 120 VFYRGRAPKG KKTEWVMHEF RLEGPFANSP KASSLKYVQE DWVLCRVFYK KREVPGQQSM 180 GSCSYDDTGS SSLPPLMDSY ITFNQTLPNF QDNYNELVSC FSILSSSQQD QIITNNPIFT 240 HFNHSEPNNI ISTKNSTTFG KNIPVGTDCL DPVACDKKVI KAVLNQLTKI ESNVPNMQGS 300 SPSLGEPSPD SYLSEVGMPT NMWNHHY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 5e-52 | 14 | 173 | 11 | 171 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in the root tip and in lateral root initiation sites. Also detected in expanding cotyledon, and in leaf primordia. {ECO:0000269|PubMed:11114891}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006441024.1 | 0.0 | NAC domain-containing protein 21/22 | ||||
Swissprot | Q84TE6 | 1e-114 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | V4VN31 | 0.0 | V4VN31_9ROSI; Uncharacterized protein | ||||
STRING | XP_006441024.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3619 | 28 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56010.2 | 1e-113 | NAC domain containing protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10021117m |
Entrez Gene | 18046170 |