PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Ciclev10021073m | ||||||||
Common Name | CICLE_v10021073mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 333aa MW: 36967.3 Da PI: 6.6834 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.9 | 2.8e-19 | 119 | 169 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr+++ +g+W+AeIrdp r r +lg+++taeeAa +++a+ +l+g Ciclev10021073m 119 KKFRGVRQRP-WGKWAAEIRDPL----RrVRLWLGTYDTAEEAAMVYDNAAIQLRG 169 59********.**********72....45*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.28E-33 | 119 | 177 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 5.3E-30 | 120 | 177 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.7E-21 | 120 | 177 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.657 | 120 | 177 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.9E-37 | 120 | 183 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.0E-12 | 120 | 169 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-10 | 121 | 132 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-10 | 143 | 159 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042991 | Biological Process | transcription factor import into nucleus | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 333 aa Download sequence Send to blast |
MVNSRHSVIP PVKYTEHRKH TKLMTPFSTN GQEMKPRVVR ISVTDGDATD SSSDEDCEVY 60 KRPRVKKFLS EIMIASSSSS SEIDVVSKSR ISKCKKKKKS GKVGAPATLK PAAKQPAGKK 120 FRGVRQRPWG KWAAEIRDPL RRVRLWLGTY DTAEEAAMVY DNAAIQLRGP DALTNFATPP 180 PKFPSQIKQS LSSGYNSGEE SHNNINNLSS PVSVLRCPSP SNEEAESRTS KESPDIASDM 240 REMRDESSVS ETLSAFSEYS TFDNTLFPND IFDFKSSVPD LFGCTEGIFK DDWDGLFYDS 300 SMDFGFGLST WRADDHFQDI GDIFASDNLV AI* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-20 | 118 | 176 | 3 | 62 | ATERF1 |
3gcc_A | 2e-20 | 118 | 176 | 3 | 62 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00027 | PBM | Transfer from AT4G23750 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AM466649 | 8e-44 | AM466649.2 Vitis vinifera contig VV78X085330.6, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006439407.1 | 0.0 | ethylene-responsive transcription factor CRF2 | ||||
TrEMBL | V4TH44 | 0.0 | V4TH44_9ROSI; Uncharacterized protein | ||||
STRING | XP_006439407.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G23750.2 | 1e-64 | cytokinin response factor 2 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Ciclev10021073m |
Entrez Gene | 18047337 |