PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10021059m
Common NameCICLE_v10021059mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 335aa    MW: 37203 Da    PI: 6.3565
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10021059mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.24.7e-1984132355
              AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a+++ ++k++g
  Ciclev10021059m  84 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDKEARKIRG 132
                      9*******.**********954...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.80283140IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-3283141IPR001471AP2/ERF domain
SuperFamilySSF541713.6E-2283141IPR016177DNA-binding domain
SMARTSM003808.3E-3783146IPR001471AP2/ERF domain
PfamPF008471.0E-1184132IPR001471AP2/ERF domain
PRINTSPR003679.1E-128495IPR001471AP2/ERF domain
CDDcd000182.30E-3384141No hitNo description
PRINTSPR003679.1E-12106122IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MCGGSILGDF FPRHGGSRVT ASDLWPNSPF AATKQLPHNF ESTPFSDEHQ SLAKIKRPQP  60
PSYLNSCSAS GDEKKPKRQR KNLYRGIRQR PWGKWAAEIR DPRKGVRVWL GTFNTAEEAA  120
RAYDKEARKI RGKKAKVNFP NEEDVFTVTP AAAAHAYHHH QHNHNPTPSP LPSLSQEDLF  180
SRNNSSISSV GFDLYGYDLN PQIVTSGGDE NSGTGSGSVS EGGYDSTELM LNCNQNVNDG  240
SFAQMKVKAE EQEEEEKRKA EEEENEVRKL SEELMAYENF MKFYQLPYLD GQSPVSNNNN  300
NNNNINIVHE GVVGNLWSFD DVTVAPAPAN SKAL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A9e-2284140360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A1e-21841421574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17479KPKRQR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.50050.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ5449160.0FJ544916.1 Citrus unshiu putative ethylene responsive element binding protein 3 (EREBP3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006444410.10.0ethylene-responsive transcription factor ERF073
TrEMBLV4U0X60.0V4U0X6_9ROSI; Uncharacterized protein
STRINGXP_006444410.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.13e-39ethylene-responsive element binding protein