PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10020886m
Common NameCICLE_v10020886mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 352aa    MW: 40227.7 Da    PI: 4.8782
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10020886mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.15.8e-15120168254
              AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                       ykGVr+++ +g++ AeIrd +     r  r +lg+f taeeA  a+ + + ++e
  Ciclev10020886m 120 IYKGVRRRP-WGKYSAEIRDpF-----RrVRLWLGTFNTAEEASSAYQKKKHEFE 168
                      69*******.**********66.....45******************98887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.67E-20119160No hitNo description
PfamPF008475.5E-8120167IPR001471AP2/ERF domain
SMARTSM003802.6E-12120166IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-15120167IPR016177DNA-binding domain
PROSITE profilePS5103217.543120182IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.9E-20120164IPR001471AP2/ERF domain
PRINTSPR003672.5E-9121132IPR001471AP2/ERF domain
PRINTSPR003672.5E-9143159IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MPSLQRQILD EEDLNDSKSK KMPKREGKNL SSMRKVRIIY HDPEATDSSS EEDECYDRKR  60
TQFPGARRCI QEISLPDFSS ETSEETALQL NDDQSKHDVD IKFDENKKNE SKKTQRSSTI  120
YKGVRRRPWG KYSAEIRDPF RRVRLWLGTF NTAEEASSAY QKKKHEFESM CEGDLKKDKN  180
LSISSTVVVY ERTGGDNTSG SLSPLSPSSV LDVGTSIRLG NELESPIKKE DACKEKFHDK  240
CNVEKVAKDH NIEKIEEICN VEQHLKEEQP ISYLLEAPYL SPSVTKELGL LDPYTQFQAD  300
FAHYYDGFDY SFSEDPSVCE SEISKVTGLS KFDHMLEDFA WADATLDLTC F*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006440961.10.0ethylene-responsive transcription factor ERF118
TrEMBLV4TWD50.0V4TWD5_9ROSI; Uncharacterized protein
STRINGXP_006440961.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.21e-24ERF family protein