PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10020722m
Common NameCICLE_v10020722mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family CO-like
Protein Properties Length: 368aa    MW: 41901.4 Da    PI: 5.4227
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10020722mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.61.9e-061860339
         zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                     +r+C+++e    +l+C++   ++C++C +  H +      H++
  Ciclev10020722m 18 MRTCNTCEAAVSRLYCHTHLAYFCDSCDERVHAYnsmalpHER 60
                     589*******9*********************77778888876 PP
2CCT65.21.9e-22301344144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      R a++lRY+eKrk R+FeKkirY+sRKa+Ae RpRvKGrF++++
  Ciclev10020722m 301 RVAKVLRYREKRKARRFEKKIRYASRKAYAEARPRVKGRFARKT 344
                      89***************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501198.6031663IPR000315B-box-type zinc finger
SMARTSM003360.00451663IPR000315B-box-type zinc finger
CDDcd000211.93E-41963No hitNo description
PfamPF062035.9E-16301343IPR010402CCT domain
PROSITE profilePS5101716.589301343IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MLNENSSGDG DGYPGDWMRT CNTCEAAVSR LYCHTHLAYF CDSCDERVHA YNSMALPHER  60
VWVSAACENG QATFSCNTDA ASLRLSCDAD KHLANFLAHH HHARVPAPPF SDLFTAPSST  120
YLPDPMFDTE KEVTAPTIDE VDEDEMDSWL LLEPANHDNQ MNSGHTYVQE LDESFGMEYN  180
SCTKHECQDQ NNLQQLQCTH RGDNGSDGVV PVQPFQVKDK EEQQKQQQQQ ENEYFSRKYE  240
ASKAAFINNP SISQTVPVSG ILPKATRADI SSSYTKYSQG TNDLFPNFSF FVPLQFSPMN  300
RVAKVLRYRE KRKARRFEKK IRYASRKAYA EARPRVKGRF ARKTEMDFEV DEMFSIEEYG  360
YGIVPSY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006440849.10.0zinc finger protein CONSTANS-LIKE 2
TrEMBLV4VMM80.0V4VMM8_9ROSI; Uncharacterized protein
STRINGXP_006440849.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1921777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02380.15e-45CONSTANS-like 2