PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10020713m

Common Name

CICLE_v10020713mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

TCP

Protein Properties

Length: 369aa MW: 39305.2 Da PI: 7.2381

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10020713m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	113.4	3.1e-35	88	191	4	105
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.......eaesssssasnsssgka 90 k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++t+ WLl+ a++ai+e+tgt++ +a ++ + + s+++++++ + Ciclev10020713m 88 KRSSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEHAEQAIIEATGTGTVPAIAVsvngtlkIPTTTTSNVHHPNNVEI 181 899***********************************************************88888444322223322222222222222211 PP TCP 91 aksaakskksqksaa 105 +++k++k+++ Ciclev10020713m 182 -----SPEKKRKRSS 191 .....2222222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.8E-30	91	191	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	26.003	92	146	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence Send to blast
MTSCRETEPD DDGVASDVST GDAEESNKTV HETTPLQAIP LKEEPVDSYQ EQKPGLPTPI 60 GVVPVAMQMQ VPMQVPMTTV TANNNNNKRS STKDRHTKVE GRGRRIRIPA TCAARIFQLT 120 RELGHKSDGE TVRWLLEHAE QAIIEATGTG TVPAIAVSVN GTLKIPTTTT SNVHHPNNVE 180 ISPEKKRKRS SSDNDDINCS RAVTVTQPCG LAPVAPQGLV PVWTLGNAGG MNMNMMVPAN 240 TFWMVPQVQP GPSQPQIWAF SPVLNVAARP VSSFVGASAT AGSFEHVSTS SVQVQPVVVN 300 NNKNNSVNGL SSSVGATVTT NSSSSMAPSM SSGGKPQMLR DFSLEIYDKQ ELQLLGRSGN 360 LHSQPNKP*

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence Send to blast

MTSCRETEPD DDGVASDVST GDAEESNKTV HETTPLQAIP LKEEPVDSYQ EQKPGLPTPI  60
GVVPVAMQMQ VPMQVPMTTV TANNNNNKRS STKDRHTKVE GRGRRIRIPA TCAARIFQLT  120
RELGHKSDGE TVRWLLEHAE QAIIEATGTG TVPAIAVSVN GTLKIPTTTT SNVHHPNNVE  180
ISPEKKRKRS SSDNDDINCS RAVTVTQPCG LAPVAPQGLV PVWTLGNAGG MNMNMMVPAN  240
TFWMVPQVQP GPSQPQIWAF SPVLNVAARP VSSFVGASAT AGSFEHVSTS SVQVQPVVVN  300
NNKNNSVNGL SSSVGATVTT NSSSSMAPSM SSGGKPQMLR DFSLEIYDKQ ELQLLGRSGN  360
LHSQPNKP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	184	189	KKRKRS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KR492100	4e-89	KR492100.1 UNVERIFIED: Citrus sinensis clone 33-2c mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006440511.1	0.0	transcription factor TCP9
TrEMBL	V4TV57	0.0	V4TV57_9ROSI; Uncharacterized protein
STRING	XP_006440511.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17337	6	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51910.2	2e-58	TCP family protein

Link Out ? help Back to Top
Phytozome	Ciclev10020713m
Entrez Gene	18048987