PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10020626m
Common NameCICLE_v10020626mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family TCP
Protein Properties Length: 379aa    MW: 42314.7 Da    PI: 7.6369
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10020626mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP90.83e-28632133117
              TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......................ssssasec 73 
                      g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk i+WLl   k  i++l+ +                       + +s+++ 
  Ciclev10020626m  63 GGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVIDWLLDVTKNDIDKLPPLqipqglfghqfhpsqmmlqsnapT-TSHHSL 155
                      79*************************************************************888888888666666666554422.222122 PP

              TCP  74 .eaesssssasnsssg....................kaaksaa.kskksqksaasalnlakesrak 117
                       ++++s+        +                    +a+k ++ ++ +++k +++a++l++++++k
  Ciclev10020626m 156 mTNSTSV--------DdhgdqdqsryswdleavslmRANKGKEvERDHEDKIHQEASSLSAHHHQK 213
                      2111111........012222223466777777777444433334444444444445555555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136928.79864122IPR017887Transcription factor TCP subgroup
PfamPF036341.7E-2864184IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MLANQRIKNY SSAANCRERG FQAKQEDDTS ESSKLISRPP PSSSRQWSGF RNPRIVRVSR  60
SFGGKDRHSK VCTIRGLRDR RIRLSVPTAI QLYDLQDRLG LSQPSKVIDW LLDVTKNDID  120
KLPPLQIPQG LFGHQFHPSQ MMLQSNAPTT SHHSLMTNST SVDDHGDQDQ SRYSWDLEAV  180
SLMRANKGKE VERDHEDKIH QEASSLSAHH HQKFYPGLFN NTSNNNAMPL NPYYHWEPSN  240
LSLSQFGSGH DFLSHQQAAD QNYAFYSNAA AAAASLSHHH HLFFCPPAAS ATMPSLFPTY  300
NNAPYVSNAQ EGTSHDQSPR QMNHFQLLSS SSSSSSQSAL HNNLLLPISS LAITSNSSQV  360
KPFSLLNDES NPHEKEDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-1869123155Putative transcription factor PCF6
5zkt_B2e-1869123155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00065PBMTransfer from AT5G60970Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006477684.10.0transcription factor TCP17 isoform X1
TrEMBLV4VMG00.0V4VMG0_9ROSI; Uncharacterized protein
STRINGXP_006440774.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35762763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.16e-50TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5