PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10020545m

Common Name

CICLE_v10020545mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

CO-like

Protein Properties

Length: 388aa MW: 43930.6 Da PI: 6.2292

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10020545m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	22	3.4e-07	19	61	3	39
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 r C+ +++ + l+C+ + lC C e H+ H++ Ciclev10020545m 19 GRLCDYCNDRVAVLYCRADTAKLCLFCDKEVHSTnqlfskHSR 61 689*****************************66777777776 PP
2	zf-B_box	27.9	4.7e-09	61	109	2	42
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg........Htvvpl 42 + + C+ ++ ++++fCe+ ++ lC +C e+H++ H+++p+ Ciclev10020545m 61 RSQLCDVCDASPASIFCETEHSVLCTNCDWESHSQsnlrvssvHNRRPI 109 5689*****************************7788999999988876 PP
3	CCT	62	1.9e-21	343	385	1	43
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 R+ al+RYkeK+ktR+++K++rYesRK++AesR R+KGrF+k Ciclev10020545m 343 RDSALSRYKEKKKTRRYDKHVRYESRKVRAESRTRIKGRFAKI 385 899**************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	10.566	17	64	IPR000315	B-box-type zinc finger
SMART	SM00336	3.7E-13	17	64	IPR000315	B-box-type zinc finger
Pfam	PF00643	8.0E-6	18	62	IPR000315	B-box-type zinc finger
CDD	cd00021	1.21E-6	20	64	No hit	No description
PROSITE profile	PS50119	10.566	60	109	IPR000315	B-box-type zinc finger
Pfam	PF00643	6.1E-6	62	108	IPR000315	B-box-type zinc finger
CDD	cd00021	8.55E-6	64	109	No hit	No description
SMART	SM00336	0.29	65	109	IPR000315	B-box-type zinc finger
Pfam	PF06203	9.1E-16	343	384	IPR010402	CCT domain
PROSITE profile	PS51017	14.574	343	385	IPR010402	CCT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence Send to blast
MTGATQATEH EQRQDQRKGR LCDYCNDRVA VLYCRADTAK LCLFCDKEVH STNQLFSKHS 60 RSQLCDVCDA SPASIFCETE HSVLCTNCDW ESHSQSNLRV SSVHNRRPIE SFSGCPSVNE 120 MFAIIGFDDL DSKALFLNDE TRNYSHFDGV DSDGFSDLFA WETPDFVSLD DLIVSSNAGH 180 NFQAIGVPPL PKNRNAAGGQ HKEEMLHQLR QLAKLDPNFK YENANIDEPI VGFHSLVPEP 240 ISQPGNMNTG SELDAEPNRF PAYEASTLQW FGDSFDHANQ LPSTLFKSCK EESFIVPEKH 300 FDTDGFVKNI NEGGEGQSQH PTNTEKSSVF HRVSVHELNS QERDSALSRY KEKKKTRRYD 360 KHVRYESRKV RAESRTRIKG RFAKIDH*

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence Send to blast

MTGATQATEH EQRQDQRKGR LCDYCNDRVA VLYCRADTAK LCLFCDKEVH STNQLFSKHS  60
RSQLCDVCDA SPASIFCETE HSVLCTNCDW ESHSQSNLRV SSVHNRRPIE SFSGCPSVNE  120
MFAIIGFDDL DSKALFLNDE TRNYSHFDGV DSDGFSDLFA WETPDFVSLD DLIVSSNAGH  180
NFQAIGVPPL PKNRNAAGGQ HKEEMLHQLR QLAKLDPNFK YENANIDEPI VGFHSLVPEP  240
ISQPGNMNTG SELDAEPNRF PAYEASTLQW FGDSFDHANQ LPSTLFKSCK EESFIVPEKH  300
FDTDGFVKNI NEGGEGQSQH PTNTEKSSVF HRVSVHELNS QERDSALSRY KEKKKTRRYD  360
KHVRYESRKV RAESRTRIKG RFAKIDH*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006444238.1	0.0	zinc finger protein CONSTANS-LIKE 13
Refseq	XP_024045635.1	0.0	zinc finger protein CONSTANS-LIKE 13
TrEMBL	A0A067H8R2	0.0	A0A067H8R2_CITSI; Uncharacterized protein
TrEMBL	V4TAX4	0.0	V4TAX4_9ROSI; Uncharacterized protein
STRING	XP_006444238.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8148	27	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47890.1	1e-104	B-box type zinc finger protein with CCT domain

Link Out ? help Back to Top
Phytozome	Ciclev10020545m
Entrez Gene	18050165