PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10020480m
Common NameCICLE_v10020480mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 399aa    MW: 44604.9 Da    PI: 7.9502
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10020480mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM175.71.3e-54161411128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGfrFhPtdeel+++yL kkv +  +++ ++i +vd++k ePw+Lp k+k +ekewyfF+ rd+ky+tg r+nrat sgyWkatgkdke+++
  Ciclev10020480m  16 LPPGFRFHPTDEELITHYLYKKVLDVCFSC-RAIGDVDLNKNEPWELPWKAKMGEKEWYFFCMRDRKYPTGLRTNRATVSGYWKATGKDKEIYR 108
                      79***************************9.89***************888999**************************************** PP

              NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +++lvg+kktLvfy+grapkgek++Wvmheyrl
  Ciclev10020480m 109 -GKSLVGMKKTLVFYRGRAPKGEKSSWVMHEYRL 141
                      .999****************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-6013151IPR003441NAC domain
PROSITE profilePS5100555.55216199IPR003441NAC domain
PfamPF023656.5E-2917141IPR003441NAC domain
SuperFamilySSF1019412.09E-60187199IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MENVSGVGKE DDQMDLPPGF RFHPTDEELI THYLYKKVLD VCFSCRAIGD VDLNKNEPWE  60
LPWKAKMGEK EWYFFCMRDR KYPTGLRTNR ATVSGYWKAT GKDKEIYRGK SLVGMKKTLV  120
FYRGRAPKGE KSSWVMHEYR LDGKFSVHSL PKTAKVCAFS AVFSPVFFPL FLSTLFLLTL  180
FLCFLVMQNE WVLCRVFQKG SGGKKTHISG LAGLGSFGNE LGPPGLPPLM DSSPDNGSKT  240
IKSVADSAYV SCFSNSIDLQ RNQKTTTTIE NFFNNPPPIS VSSNCPDVFP RIPLSSNSFY  300
SPLSVPVPSH AQFPGSVFMQ DHSILRALIE NQGSNMSQSF KTEREMISVS QDTGLTADMN  360
PEISSVVSNL EMVKRPFNDH DAPSTSAGPV DFDCFWNY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-481314114142NO APICAL MERISTEM PROTEIN
1ut4_B2e-481314114142NO APICAL MERISTEM PROTEIN
1ut7_A2e-481314114142NO APICAL MERISTEM PROTEIN
1ut7_B2e-481314114142NO APICAL MERISTEM PROTEIN
3swm_A2e-481314117145NAC domain-containing protein 19
3swm_B2e-481314117145NAC domain-containing protein 19
3swm_C2e-481314117145NAC domain-containing protein 19
3swm_D2e-481314117145NAC domain-containing protein 19
3swp_A2e-481314117145NAC domain-containing protein 19
3swp_B2e-481314117145NAC domain-containing protein 19
3swp_C2e-481314117145NAC domain-containing protein 19
3swp_D2e-481314117145NAC domain-containing protein 19
4dul_A2e-481314114142NAC domain-containing protein 19
4dul_B2e-481314114142NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006440624.10.0NAC domain-containing protein 100
SwissprotQ9FLJ21e-146NC100_ARATH; NAC domain-containing protein 100
TrEMBLV4TQ850.0V4TQ85_9ROSI; Uncharacterized protein
STRINGXP_006440625.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40028174
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.11e-144NAC domain containing protein 100
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]