PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10020304m | ||||||||
Common Name | CICLE_v10019979mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | C3H | ||||||||
Protein Properties | Length: 422aa MW: 47407.6 Da PI: 4.8281 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 41.2 | 2.7e-13 | 127 | 148 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C f+++tGtCk+G++CkF+H+ Ciclev10020304m 127 DCTFYMKTGTCKFGSNCKFNHP 148 7********************9 PP | |||||||
2 | zf-CCCH | 30.7 | 5.4e-10 | 186 | 206 | 5 | 25 |
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C++++rtG Ck+G C+F+H Ciclev10020304m 186 ECKYYLRTGGCKFGKACRFNH 206 7******************** PP | |||||||
3 | zf-CCCH | 40 | 6.4e-13 | 229 | 253 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++++r+G CkyG++C+F+H+ Ciclev10020304m 229 GEKECPYYMRNGSCKYGANCRFNHP 253 7899********************9 PP | |||||||
4 | zf-CCCH | 28.5 | 2.7e-09 | 364 | 390 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f+rtG Cky ++Ck++H++ Ciclev10020304m 364 PGQPECSYFLRTGDCKYKSNCKYHHPK 390 5789*********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 2.7E-6 | 122 | 149 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.72E-7 | 122 | 150 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.544 | 122 | 150 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.3E-11 | 127 | 148 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.1E-5 | 128 | 147 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.117 | 181 | 209 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.0E-4 | 181 | 208 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.0E-8 | 186 | 206 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.7E-5 | 186 | 209 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-4 | 187 | 208 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.0E-7 | 227 | 254 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.324 | 227 | 255 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.9E-10 | 229 | 253 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.49E-6 | 229 | 254 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.8E-5 | 233 | 252 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.3E-4 | 363 | 390 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.314 | 363 | 391 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.1E-7 | 365 | 390 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-5 | 367 | 392 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.1E-4 | 369 | 389 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 422 aa Download sequence Send to blast |
MELSELISVP NLNHEKTKFE LGLQSSSPKS DLDPPPSDLD YTAGIEEELR NLDLREAEEI 60 DSIKAAEIEI VVEEEDEEEE EEEEEESESD ENNKSNIIVQ NEIQNENEYG NQMRKRYPYP 120 VRPDAQDCTF YMKTGTCKFG SNCKFNHPVR RKNQSSKEKV KEREELIERP GQSQSQGQSE 180 SQSQIECKYY LRTGGCKFGK ACRFNHTRAK STVAPVLELN FLGLPIRPGE KECPYYMRNG 240 SCKYGANCRF NHPDPTAVGG SDSPSGYGNG GSVSSQAPSQ ASIGSWSSPR ALNEPAPFVP 300 MMYSPTPGVP SQNSEWNGYQ SPLYPQERSV QSAPTYVINN NPLVDNVQII HQPQMLVDEF 360 PERPGQPECS YFLRTGDCKY KSNCKYHHPK NRIPKSPPCT LSDKGLPLRP LQSENKNCSL 420 L* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ccl.2144 | 1e-118 | flower |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006440010.1 | 0.0 | zinc finger CCCH domain-containing protein 43 isoform X3 | ||||
Swissprot | Q9STM4 | 1e-125 | C3H43_ARATH; Zinc finger CCCH domain-containing protein 43 | ||||
TrEMBL | V4TNL8 | 0.0 | V4TNL8_9ROSI; Uncharacterized protein | ||||
STRING | XP_006440009.1 | 0.0 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48440.1 | 1e-123 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10020304m |
Entrez Gene | 18048472 |
Publications ? help Back to Top | |||
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