PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10020200m | ||||||||
Common Name | CICLE_v10019979mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | C3H | ||||||||
Protein Properties | Length: 437aa MW: 48683.4 Da PI: 4.5556 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 41.1 | 2.9e-13 | 127 | 148 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C f+++tGtCk+G++CkF+H+ Ciclev10020200m 127 DCTFYMKTGTCKFGSNCKFNHP 148 7********************9 PP | |||||||
2 | zf-CCCH | 39.3 | 1.1e-12 | 189 | 213 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++++r+G CkyG++C+F+H+ Ciclev10020200m 189 GEKECPYYMRNGSCKYGANCRFNHP 213 6789********************9 PP | |||||||
3 | zf-CCCH | 28.4 | 2.8e-09 | 324 | 350 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f+rtG Cky ++Ck++H++ Ciclev10020200m 324 PGQPECSYFLRTGDCKYKSNCKYHHPK 350 5789*********************96 PP | |||||||
4 | zf-CCCH | 33.5 | 7.1e-11 | 371 | 395 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ C++++r+G+Ck+G+ Ck+ H+ Ciclev10020200m 371 GQNVCSYYSRYGICKFGPACKYDHP 395 6678********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 2.7E-6 | 122 | 149 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.11E-7 | 122 | 150 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.544 | 122 | 150 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.6E-11 | 127 | 148 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.2E-5 | 128 | 147 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.591 | 188 | 215 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.5E-6 | 189 | 214 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.2E-10 | 189 | 213 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.9E-6 | 190 | 214 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.9E-5 | 193 | 212 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.3E-4 | 323 | 350 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.314 | 323 | 351 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.5E-7 | 325 | 350 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.7E-5 | 327 | 352 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.5E-4 | 329 | 349 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.79E-6 | 367 | 395 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.0E-6 | 369 | 396 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.558 | 369 | 397 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.2E-8 | 371 | 395 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 437 aa Download sequence Send to blast |
MELSELISVP NLNHEKTKFE LGLQSSSPKS DLDPPPSDLD YTAGIEEELR NLDLREAEEI 60 DSIKAAEIEI VVEEEDEEEE EEEEEESESD ENNKSNIIVQ NEIQNENEYG NQMRKRYPYP 120 VRPDAQDCTF YMKTGTCKFG SNCKFNHPVR RKNQSSKEKV KEREELIERP GQSQSQGQSE 180 SQSQIECKGE KECPYYMRNG SCKYGANCRF NHPDPTAVGG SDSPSGYGNG GSVSSQAPSQ 240 ASIGSWSSPR ALNEPAPFVP MMYSPTPGVP SQNSEWNGYQ SPLYPQERSV QSAPTYVINN 300 NPLVDNVQII HQPQMLVDEF PERPGQPECS YFLRTGDCKY KSNCKYHHPK NRIPKSPPCT 360 LSDKGLPLRP GQNVCSYYSR YGICKFGPAC KYDHPIHPDA SAEYGLDPPP SFGDSTTRQE 420 TGMAGTGNGN GSDKNI* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ccl.2144 | 1e-119 | flower |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006440011.1 | 0.0 | zinc finger CCCH domain-containing protein 43 isoform X2 | ||||
Swissprot | Q9STM4 | 1e-114 | C3H43_ARATH; Zinc finger CCCH domain-containing protein 43 | ||||
TrEMBL | V4TTN0 | 0.0 | V4TTN0_9ROSI; Uncharacterized protein | ||||
STRING | XP_006440009.1 | 0.0 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48440.1 | 1e-112 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10020200m |
Entrez Gene | 18048472 |
Publications ? help Back to Top | |||
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