PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10020144m | ||||||||
Common Name | CICLE_v10020144mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | MYB | ||||||||
Protein Properties | Length: 447aa MW: 49473.9 Da PI: 7.7829 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.4 | 2.9e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l++ ++++G g+W+++++ g+ R++k+c++rw +yl Ciclev10020144m 14 KGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYL 61 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 44.3 | 4e-14 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg ++++E+ l++++++ lG++ W+ Ia+ ++ gRt++++k+ w++ Ciclev10020144m 67 RGTFSQQEENLIIELHAVLGNR-WSQIAAQLP-GRTDNEIKNLWNS 110 899*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.6E-28 | 6 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.116 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.12E-29 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.7E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.3E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.58E-12 | 17 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.2E-25 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.8E-13 | 66 | 114 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 20.403 | 66 | 116 | IPR017930 | Myb domain |
Pfam | PF00249 | 4.2E-13 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.69E-9 | 69 | 109 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 447 aa Download sequence Send to blast |
MGRHSCCYKQ KLRKGLWSPE EDEKLLRHIT KYGHGCWSSV PKQAGLQRCG KSCRLRWINY 60 LRPDLKRGTF SQQEENLIIE LHAVLGNRWS QIAAQLPGRT DNEIKNLWNS CLKKKLRQRG 120 IDPVTHKPLS EVENGEDKNQ TTNSQDKVSG VSGELNLLNT ELTAKHGTTA ALNEQKPTSV 180 TAQAYHLSEI QGSSIPSTVN NNRSNFYTHR FASSNQESSS ITNSQPSDFV GHFPLQQLNC 240 ASNARLSTAA SNSPLWFMQT SKSFDINSQF SSNAMPTILP PVSSSSLFSA PMSYKTSVTL 300 PSDNHSIPSF TVNGSRYWEA GGASNSNSVS SSSTELQSTS SFLESSIFPW GLADCSSSEK 360 EGQINLIDSH PDDVKWPEYF QTPSLLMAAA LQNQTSQSLY NEIKSETHFL TDSSSGIWPQ 420 NQQQPLQNSD ICAKEIQRLT ATYGHI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-28 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 111 | 117 | LKKKLRQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB970784 | 1e-137 | AB970784.1 Populus nigra PniMYB055 mRNA for MYB transcriptional factor, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006444636.1 | 0.0 | transcription factor MYB61 | ||||
TrEMBL | A0A2H5NYP9 | 0.0 | A0A2H5NYP9_CITUN; Uncharacterized protein | ||||
TrEMBL | V4U6S6 | 0.0 | V4U6S6_9ROSI; Uncharacterized protein | ||||
STRING | XP_006444636.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09540.1 | 1e-104 | myb domain protein 61 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10020144m |
Entrez Gene | 18047011 |