PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10019968m
Common NameCICLE_v10019968mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C3H
Protein Properties Length: 478aa    MW: 51028.5 Da    PI: 8.9385
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10019968mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.51.7e-115276327
                     S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                      + C f++rtG C yGdrC+++H++
  Ciclev10019968m 52 VPDCVFYMRTGVCGYGDRCRYNHPR 76
                     689********************96 PP
2zf-CCCH421.5e-1395121127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +++++C+f+++tGtCk+G++CkF+H++
  Ciclev10019968m  95 PGEPICQFYLKTGTCKFGASCKFHHPK 121
                      5799*********************96 PP
3zf-CCCH36.67.5e-12142167227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++C+++++tG+Ck+G +CkF+H++
  Ciclev10019968m 142 GEKECSYYLKTGQCKFGITCKFHHPQ 167
                      7899********************97 PP
4zf-CCCH38.61.8e-12298324127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +++++C++f++tG Ck+G++C+F+H++
  Ciclev10019968m 298 PGEPECQYFLKTGDCKFGSSCRFHHPR 324
                      5799*********************96 PP
5zf-CCCH34.24.3e-11347370427
                      ---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                       +C f++++G Ck+G++CkF H++
  Ciclev10019968m 347 QPCTFYLQNGRCKFGATCKFDHPM 370
                      69********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.0944977IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-54976IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-65277IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-85276IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-55576IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.65294122IPR000571Zinc finger, CCCH-type
SMARTSM003569.5E-894121IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-1196121IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-698122IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-599121IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.821140168IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-5140167IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.11E-6142168IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-9142167IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-4146166IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.986297325IPR000571Zinc finger, CCCH-type
SMARTSM003564.2E-6297324IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-9299324IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-6302326IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-5303324IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.338343371IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-6343370IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-6346374IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-5347369IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-8347370IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MELYGRNNTS RNGSQSGHQP QWSPTDQATG LEESMWQSDL KVNESYPQRH GVPDCVFYMR  60
TGVCGYGDRC RYNHPRNRAA VEAAVRATGD YPDRPGEPIC QFYLKTGTCK FGASCKFHHP  120
KHSGGSMSHV PLNIYGYPLR PGEKECSYYL KTGQCKFGIT CKFHHPQPAG TSLPASAPQF  180
YPPVQSPTVP MAEQYGGAST SLRVARPPLL ASSYVQGAYG PVLFSPGVVP FSGWNPYSAS  240
VSPVLSPGAQ PAVGATSLYG VTQISSSMPA LAGLYPSLPS SAGPSSSGQM EQSFPERPGE  300
PECQYFLKTG DCKFGSSCRF HHPRDRVVPR TNCALSPLGL PLRPGAQPCT FYLQNGRCKF  360
GATCKFDHPM GAMRYSPSAS SLIETPVAPY PVGSLLSTLA PASSSSDLRP ELISGSKKDS  420
LLSRIPSSGN TSSSSVGLIF SQTGSVPLSD LQLSGQSSVP LSSSRSARQG VEVRRLS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.77930.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006444253.10.0zinc finger CCCH domain-containing protein 32
RefseqXP_006479891.10.0zinc finger CCCH domain-containing protein 32
SwissprotQ84W910.0C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A067HHC80.0A0A067HHC8_CITSI; Uncharacterized protein
TrEMBLA0A2H5NMH00.0A0A2H5NMH0_CITUN; Uncharacterized protein
TrEMBLV4TAY90.0V4TAY9_9ROSI; Uncharacterized protein
STRINGXP_006479891.10.0(Citrus sinensis)
STRINGXP_006444253.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59122647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.30.0C3H family protein