PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10019949m

Common Name

CICLE_v10019949mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

Dof

Protein Properties

Length: 479aa MW: 52162.4 Da PI: 6.6144

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10019949m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.7	5.9e-39	126	185	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s++tkfCyynny+++qPr+fCkaC+ryWt+GG++rnvPvG+grrknk+ Ciclev10019949m 126 PDKILPCPRCNSMDTKFCYYNNYNINQPRHFCKACQRYWTAGGTMRNVPVGAGRRKNKNC 185 7899*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-31	114	183	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.5E-31	128	184	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.826	130	184	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	132	168	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 479 aa Download sequence Send to blast
MRQESKDPAI RLFGKKIAFP SDGEVPVIFS EELPSPAAKE ECSIEAEEEK TEEDSSAVKA 60 AETTQQDDTT PPNIDESKIP ESPEANVNPK TPSIDDETAK SKAAKSEKSQ NDASNSNSQE 120 KTLKKPDKIL PCPRCNSMDT KFCYYNNYNI NQPRHFCKAC QRYWTAGGTM RNVPVGAGRR 180 KNKNCASQYR HITISEALQA ARIDAPNGIS HPSVKSNGRV LSFGLDAPIC DSMASVLNLA 240 EKKVLNGTQN GFHGFQEQEI PVPCRGGENG DDCSSGSSIT VSNPMEEVGR NGMQEPLMRS 300 INGFPSPIPC LPGVPWPYPW NASVPPPAFC PSGFPMSFYP AAFWNCGIPS TWNMPWISPQ 360 SSPNQKSPSS GPNSPTLGKH SRDADMIKSE NMDKEELSKE KNRCVLVPKT LRIDDPNEAA 420 KSSIWATLGI KNESLAGGRL FKGLQSKSDE KSHMAETSPV LRANPAALSR SLNFHEST*

Sequence ? help Back to Top

Protein Sequence Length: 479 aa Download sequence Send to blast

MRQESKDPAI RLFGKKIAFP SDGEVPVIFS EELPSPAAKE ECSIEAEEEK TEEDSSAVKA  60
AETTQQDDTT PPNIDESKIP ESPEANVNPK TPSIDDETAK SKAAKSEKSQ NDASNSNSQE  120
KTLKKPDKIL PCPRCNSMDT KFCYYNNYNI NQPRHFCKAC QRYWTAGGTM RNVPVGAGRR  180
KNKNCASQYR HITISEALQA ARIDAPNGIS HPSVKSNGRV LSFGLDAPIC DSMASVLNLA  240
EKKVLNGTQN GFHGFQEQEI PVPCRGGENG DDCSSGSSIT VSNPMEEVGR NGMQEPLMRS  300
INGFPSPIPC LPGVPWPYPW NASVPPPAFC PSGFPMSFYP AAFWNCGIPS TWNMPWISPQ  360
SSPNQKSPSS GPNSPTLGKH SRDADMIKSE NMDKEELSKE KNRCVLVPKT LRIDDPNEAA  420
KSSIWATLGI KNESLAGGRL FKGLQSKSDE KSHMAETSPV LRANPAALSR SLNFHEST*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in the vasculature of cotyledons and hypocotyls, leaves and roots. {ECO:0000269\|PubMed:19619493}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. {ECO:0000250, ECO:0000269\|PubMed:19619493}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00394	DAP	Transfer from AT3G47500	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. {ECO:0000269\|PubMed:19619493}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006440609.1	0.0	cyclic dof factor 3
Swissprot	Q8LFV3	1e-124	CDF3_ARATH; Cyclic dof factor 3
TrEMBL	V4VM22	0.0	V4VM22_9ROSI; Uncharacterized protein
STRING	XP_006440609.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5441	28	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	1e-117	cycling DOF factor 3

Link Out ? help Back to Top
Phytozome	Ciclev10019949m
Entrez Gene	18045780

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Corrales AR, et al. Multifaceted role of cycling DOF factor 3 (CDF3) in the regulation of flowering time and abiotic stress responses in Arabidopsis. Plant Cell Environ., 2017. 40(5): p. 748-764 [PMID:28044345] Renau-Morata B, et al. Ectopic Expression of CDF3 Genes in Tomato Enhances Biomass Production and Yield under Salinity Stress Conditions. Front Plant Sci, 2017. 8: p. 660 [PMID:28515731] Henriques R, et al. The antiphasic regulatory module comprising CDF5 and its antisense RNA FLORE links the circadian clock to photoperiodic flowering. New Phytol., 2017. 216(3): p. 854-867 [PMID:28758689]