PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10019546m
Common NameCICLE_v10019546mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family SBP
Protein Properties Length: 558aa    MW: 61225.3 Da    PI: 8.5703
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10019546mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP132.41.6e-41172247277
                      -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
              SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                      Cqv gC++dls+ k+yh+rhkvCe+hska++v+v+++eqrfCqqCsrfh l+efD++krsCr+rLa+hnerrrk+q
  Ciclev10019546m 172 CQVYGCNKDLSSSKDYHKRHKVCEAHSKAAKVIVNEIEQRFCQQCSRFHFLDEFDDGKRSCRKRLAGHNERRRKPQ 247
                      **************************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.7E-32166233IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.787169246IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.19E-37170250IPR004333Transcription factor, SBP-box
PfamPF031102.4E-31172245IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    Send to blast
MEPWSYGSEG KGAVANDRIS PADSSSRSKG YLMGWELNTS CHNMLVSHRE APGNQSFGEF  60
GFQEVVGKRL TKDNPIKDVL SSKNHFMNPN MPTPTTSFGE DESTSKRSSS VVDSNSTLDS  120
SLIDLNLGRF VDQRDSHTSK FSHGTPKFSS SKSSAAPKRV RLSGISSHTA YCQVYGCNKD  180
LSSSKDYHKR HKVCEAHSKA AKVIVNEIEQ RFCQQCSRFH FLDEFDDGKR SCRKRLAGHN  240
ERRRKPQVGV HPGRTAKLLR SHEAFAGCKF QGTTLPMSSF ICPDKLPGGI FYPEKCRTND  300
WCKCVKVEDM NDYNVVSATS ISKGNLHPKS FFPQYDFQKV VPPFHGNEVK AATESIFSAT  360
SARYPQDLGG PKSVSSPLFR DISLGSEEFS IFDTPSTIQG LSRISESGYA HPLLSSKSQN  420
SPSPLSGIPV ARPLVIGGSG GAHYNISQVS EKLIGVSSQA STSQASNKFS LSGNNSFEGS  480
NLGSILMSDS SDAANFDVSN RFYRGSDFMS SKDRLSCEDG ATIDLLKLSS QLQRVEHQNQ  540
FMQVKDENDS FCCLRIT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-28166245584squamosa promoter binding protein-like 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006440802.10.0squamosa promoter-binding-like protein 12 isoform X1
TrEMBLV4T1J00.0V4T1J0_9ROSI; Uncharacterized protein
STRINGXP_006440802.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69170.16e-53SBP family protein