PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10019153m | ||||||||
Common Name | CICLE_v10019153mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 681aa MW: 74754.8 Da PI: 6.3478 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.5 | 1.3e-19 | 29 | 84 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t+ q+++Le++F+ +++p++++r +L+++lgL rq+k+WFqNrR+++k Ciclev10019153m 29 KKRYHRHTALQIQRLEAMFKDCPHPDEKQRLQLSRELGLAPRQIKFWFQNRRTQMK 84 678899***********************************************998 PP | |||||||
2 | START | 121 | 1.6e-38 | 303 | 414 | 93 | 206 |
EEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX.HHHHHHH CS START 93 lmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlp.hwllrsl 184 m+ elq+lsp+vp R+f+++Ry++q ++g+w++v vS ds+q+ ++ ++++pSg+li++++ng+skvtwveh + ++r+p h l++ l Ciclev10019153m 303 CMYEELQVLSPVVPtREFYVLRYCQQIEQGSWAVVNVSYDSPQFSSQ----CQSHRFPSGCLIQDLPNGYSKVTWVEHLEIEDRTPiHRLYQDL 392 5899****************************************886....88999************************************** PP HHHHHHHHHHHHHHHTXXXXXX CS START 185 vksglaegaktwvatlqrqcek 206 ++sg+a+ga +w+atlqr ce+ Ciclev10019153m 393 IQSGMAFGADRWLATLQRMCER 414 ********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.67E-20 | 10 | 86 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.1E-22 | 14 | 80 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.621 | 26 | 86 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.9E-19 | 27 | 90 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.58E-18 | 28 | 87 | No hit | No description |
Pfam | PF00046 | 3.5E-17 | 29 | 84 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 61 | 84 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 36.684 | 217 | 417 | IPR002913 | START domain |
SuperFamily | SSF55961 | 2.75E-29 | 218 | 415 | No hit | No description |
CDD | cd08875 | 2.91E-89 | 221 | 413 | No hit | No description |
SMART | SM00234 | 1.7E-28 | 226 | 414 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 3.6E-8 | 231 | 262 | IPR023393 | START-like domain |
Gene3D | G3DSA:3.30.530.20 | 3.6E-8 | 301 | 403 | IPR023393 | START-like domain |
Pfam | PF01852 | 1.4E-33 | 303 | 414 | IPR002913 | START domain |
SuperFamily | SSF55961 | 6.0E-20 | 435 | 672 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009828 | Biological Process | plant-type cell wall loosening | ||||
GO:0010091 | Biological Process | trichome branching | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000976 | Molecular Function | transcription regulatory region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 681 aa Download sequence Send to blast |
MEFGSGGGGG GGGSGSGGDH DGSDPQKRKK RYHRHTALQI QRLEAMFKDC PHPDEKQRLQ 60 LSRELGLAPR QIKFWFQNRR TQMKAQHERA DNCALRAEND KIRCENIAIR EALKNVICPS 120 CGGPPVTEDS YFDEQKLRME NAQLKEELDR VSSIAAKYIG RPISQLPPVQ PIHISSLDLT 180 MGTFGGQGIS GPSLDLDLLP GSSSTLPNLP YQQIVLSDMD KSLMTDIAAN AMEELLRLLQ 240 TNEPLWMKSS TDGRDILDLD SYERMFPRAN SHLKNPNVRI ESSRDSGVVI MNGLALVDMF 300 MDCMYEELQV LSPVVPTREF YVLRYCQQIE QGSWAVVNVS YDSPQFSSQC QSHRFPSGCL 360 IQDLPNGYSK VTWVEHLEIE DRTPIHRLYQ DLIQSGMAFG ADRWLATLQR MCERFACLMV 420 SGTSTRDLGG VIPSPDGKRS MMKLAQRMVS SFCTSISTSN RHRGTTISGL NEVGVRVTLH 480 KSMDPGQPNG VVLNAATTFW LPIPPQNVFN FFKDERTRPQ WDVLTNGNAV QEVAHIANGS 540 NPGNCISVLR AINTSQNNML ILQESCIDSS GSLVVYCPVD LPAINIAMSG EDPSYIPLLP 600 SGFTISPDGH LDQGDGASTS SNVHGNMGSR SSGSLISVAF QILVSSLPSA KLNMESVTTV 660 NNLIGTTVQQ IKAALNCPSS * |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: During embryo development, expressed in all cells at the 4- and 16-cell embryo stages. Expression is restricted to the protoderm from the globular stage onward. {ECO:0000269|PubMed:25564655}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in apical meristems and young epidermal tissue including trichomes and stipules. Expressed in lateral root tips, the L1 layer of apical inflorescence meristems and early flower primordia, carpel and petal epidermis, stigma papillae, ovule primordia, nucellus and embryo. {ECO:0000269|PubMed:16778018}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which acts as positive regulator of drought stress tolerance. Can transactivate CIPK3, NCED3 and ERECTA (PubMed:18451323). Transactivates several cell-wall-loosening protein genes by directly binding to HD motifs in their promoters. These target genes play important roles in coordinating cell-wall extensibility with root development and growth (PubMed:24821957). Transactivates CYP74A/AOS, AOC3, OPR3 and 4CLL5/OPCL1 genes by directly binding to HD motifs in their promoters. These target genes are involved in jasmonate (JA) biosynthesis, and JA signaling affects root architecture by activating auxin signaling, which promotes lateral root formation (PubMed:25752924). Acts as negative regulator of trichome branching (PubMed:16778018, PubMed:24824485). Required for the establishment of giant cell identity on the abaxial side of sepals (PubMed:23095885). May regulate cell differentiation and proliferation during root and shoot meristem development (PubMed:25564655). {ECO:0000269|PubMed:16778018, ECO:0000269|PubMed:18451323, ECO:0000269|PubMed:23095885, ECO:0000269|PubMed:24821957, ECO:0000269|PubMed:24824485, ECO:0000269|PubMed:25564655, ECO:0000269|PubMed:25752924}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00232 | DAP | Transfer from AT1G73360 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024042646.1 | 0.0 | homeobox-leucine zipper protein HDG11 | ||||
Swissprot | Q9FX31 | 0.0 | HDG11_ARATH; Homeobox-leucine zipper protein HDG11 | ||||
TrEMBL | V4T315 | 0.0 | V4T315_9ROSI; Uncharacterized protein | ||||
STRING | XP_006441353.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3004 | 26 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G73360.1 | 0.0 | homeodomain GLABROUS 11 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10019153m |
Entrez Gene | 18050300 |