PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10019131m | ||||||||
Common Name | CICLE_v10019131mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | ARF | ||||||||
Protein Properties | Length: 691aa MW: 77377.3 Da PI: 6.9807 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 74.7 | 1.1e-23 | 123 | 222 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f kvlt sd++++g +++ +k+a+e+ +++++ +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF + ++ Ciclev10019131m 123 FSKVLTASDTSTHGGFSVLRKHATEClppldMNQSTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFL--RGEN 214 88****************************9445555669************************************************..4499 PP E..EEEEE CS B3 90 felvvkvf 97 +el+v+v+ Ciclev10019131m 215 GELHVGVR 222 999**996 PP | |||||||
2 | Auxin_resp | 105.5 | 6.2e-35 | 249 | 328 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t+++F v+Y+Pr+ s+F+++++k+++a+++k++vGmR+km+fe+eds+ rr+sGtvvgv+d++p +W++SkWrsLk Ciclev10019131m 249 ASHAVATQTMFVVYYKPRT--SQFIISLNKYLEAVNNKFAVGMRYKMRFEGEDSPDRRFSGTVVGVEDFSP-HWKDSKWRSLK 328 789***************6..9*************************************************.*********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.7E-42 | 114 | 238 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.36E-38 | 117 | 252 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.81E-21 | 121 | 223 | No hit | No description |
Pfam | PF02362 | 3.2E-21 | 123 | 222 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.153 | 123 | 225 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.2E-21 | 123 | 225 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 6.5E-32 | 249 | 328 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 2.0E-13 | 556 | 667 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 2.35E-14 | 573 | 654 | No hit | No description |
PROSITE profile | PS51745 | 26.665 | 578 | 659 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 691 aa Download sequence Send to blast |
MANRLGSLSQ PSSNSDDLYR ELWKACAGPL VDVPKQGQRV YYFPQGHMEQ LEASTNQELN 60 QRIPLFRLPS KILCRVVNIH LMAEQETDEV YAQITLLPEP SQNEPTTPDP CPADSPRPKV 120 HSFSKVLTAS DTSTHGGFSV LRKHATECLP PLDMNQSTPT QELVAKDLHG YEWRFKHIFR 180 GQPRRHLLTT GWSTFVTSKR LVAGDTFVFL RGENGELHVG VRCLARQQSS MPSSVISSQS 240 MHLGVLATAS HAVATQTMFV VYYKPRTSQF IISLNKYLEA VNNKFAVGMR YKMRFEGEDS 300 PDRRFSGTVV GVEDFSPHWK DSKWRSLKVQ WDEPASITRP DRVSPWEIEP FVASATPNLV 360 QPVLAKNKRP RLPMEVPPLD LPSAASAPWS ARLAQSHNLT QLSVTAEDKR IDNHVAWHHK 420 HSDFSSNSNF MSRTQSDGEW LTSPRVKFSQ QLFQEAIDDN KNISAWPAHS GHSTPHPSKP 480 NNDTLLEQVE TGRKTETGTS CRLFGIELIN HATSSAPSEK VPVSSLTTEG HIISTISAAA 540 DSDGKSDIAK EFKEKKQEQV QVSPKESQSK QSCLTSNRSR TKVQMQGVAV GRALDLTTLV 600 GYDHLIDELE EMFDIKGQLH TRTKWEIVYT DDEGDMMLVG DDPWHEFCNM VKRIFICSSQ 660 DVKKMSPGSK LPMFSIEGED ILLSSDSAEK * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-173 | 15 | 351 | 16 | 355 | Auxin response factor 1 |
4ldw_A | 1e-173 | 15 | 351 | 16 | 355 | Auxin response factor 1 |
4ldw_B | 1e-173 | 15 | 351 | 16 | 355 | Auxin response factor 1 |
4ldx_A | 1e-173 | 15 | 351 | 16 | 355 | Auxin response factor 1 |
4ldx_B | 1e-173 | 15 | 351 | 16 | 355 | Auxin response factor 1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006439306.1 | 0.0 | auxin response factor 9 isoform X2 | ||||
Swissprot | Q9XED8 | 0.0 | ARFI_ARATH; Auxin response factor 9 | ||||
TrEMBL | V4TRL7 | 0.0 | V4TRL7_9ROSI; Auxin response factor | ||||
STRING | XP_006439306.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2764 | 27 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23980.1 | 0.0 | auxin response factor 9 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10019131m |
Entrez Gene | 18046065 |