PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10019120m | ||||||||
Common Name | CICLE_v10019120mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | STAT | ||||||||
Protein Properties | Length: 694aa MW: 77786.3 Da PI: 6.111 | ||||||||
Description | STAT family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | STAT | 191.2 | 1.1e-59 | 215 | 333 | 1 | 119 |
STAT 1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipklkk 94 ldvvllna+gqpv+k+ve+ a+Llyad+g++vek++d eapLL+sydG+ef+++drp+kll+G+asfklkisqLsskcdnrLf+i+fe+pkl Ciclev10019120m 215 LDVVLLNAFGQPVNKEVEITAALLYADNGSLVEKTSDGEAPLLTSYDGIEFPTYDRPSKLLNGCASFKLKISQLSSKCDNRLFCIRFEVPKLVG 308 8********************************************************************************************* PP STAT 95 ypfleavskpirCisrsrntrsssl 119 +pfle++s pirCisr+r+ r+ s+ Ciclev10019120m 309 FPFLEVLSYPIRCISRTRTIRTFSV 333 ********************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF49899 | 4.17E-8 | 23 | 137 | IPR013320 | Concanavalin A-like lectin/glucanase domain |
Gene3D | G3DSA:3.30.505.10 | 5.9E-6 | 591 | 649 | IPR000980 | SH2 domain |
SuperFamily | SSF55550 | 3.2E-7 | 597 | 664 | IPR000980 | SH2 domain |
PROSITE profile | PS50001 | 9.574 | 599 | 693 | IPR000980 | SH2 domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 694 aa Download sequence Send to blast |
MGENVIKGED YYLLKDLRFK IEGDEEGFSL CFWVYLMKST TFSATLISQV DIGGNAPFLA 60 LNEKKILMLF PFISLHKEAP DPGKSAPLTE LQHASMDTEF PLESWIHVGC RVSTDSVQLH 120 IDGEIVAEKP VSSSFCKGSL SNSRTRITLV GSNMQGYVHD AKILPLNLSI KDHYHKDPPL 180 LLSIDTSSAS EIEEDSDGVW SIVGGKASCR RIFSLDVVLL NAFGQPVNKE VEITAALLYA 240 DNGSLVEKTS DGEAPLLTSY DGIEFPTYDR PSKLLNGCAS FKLKISQLSS KCDNRLFCIR 300 FEVPKLVGFP FLEVLSYPIR CISRTRTIRT FSVPFKRTPA SIHPTNGSQS CGFDDGSLEI 360 HHNTVLEAKP SPSSKRVRLE QEKISAMEQL DGEGSPHPLT ANKAEGAFAK GLDGTHENTE 420 DADVSPADYE SKGVRNVALK NSGKSVSDLT IFKYCLGGLA DRSHLLKEIV TSFSDEEILE 480 FAHQVSIYTG CSHHRFQIMI AKRLIEEGRN AWNLISQNNP HVHWDCAVFE IEEQFKKISC 540 CSTRPLSHQD FELLRRIAGC RDFLAQENFE KLWCWLYPVA FTLSSDWINK PWRSTSPKWI 600 EGFITKEEAE YSLQGPRGLQ EPGTFVLRFP TSRSWPHPDA GSLIVTYVGS DYTLHHRQVS 660 SDYIYRDMDV KPLQDLLFTE PELSRLGRIV RIH* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ccl.20512 | 0.0 | abscission zone |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, leaves, stems and flowers. {ECO:0000269|PubMed:15073273}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006442321.1 | 0.0 | SH2 domain-containing protein A isoform X1 | ||||
Swissprot | Q56XZ1 | 0.0 | SHB_ARATH; SH2 domain-containing protein B | ||||
TrEMBL | V4U062 | 0.0 | V4U062_9ROSI; Uncharacterized protein | ||||
STRING | XP_006442321.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5205 | 26 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78540.1 | 0.0 | SH2 domain protein B |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10019120m |
Entrez Gene | 18049531 |
Publications ? help Back to Top | |||
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