PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10019094m
Common NameCICLE_v10019094mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GRAS
Protein Properties Length: 703aa    MW: 77057.6 Da    PI: 5.4861
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10019094mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS327.82.2e-1003457013374
             GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      ++++++ e +++g+   aq +Larl+++ sp g+p+qR+a+yf+eAL+  l+   +      ++ + s ++ + +++a+k fse+sPil+f+++
  Ciclev10019094m 345 DQIFKASELIETGNPVHAQGILARLNHQLSPIGKPFQRAAFYFKEALQLLLHM--NMN---NSSLALSGYSIIFKISAYKSFSEISPILQFANF 433
                      78999**********************************************98..222...23344444569********************** PP

             GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                      t+Nqa+lea+eg++r+HiiDfdi++G+QW++L+q+L  R+egppsl+iT+++sp+++++ el+ t+e+L++fA+e+++pfe ++l   +le+l+
  Ciclev10019094m 434 TCNQALLEAFEGCNRIHIIDFDIGYGGQWASLMQELVLRSEGPPSLKITAFASPSTHDELELSFTRENLKHFASEINMPFELEIL---SLEALN 524
                      ************************************************************************************9...666776 PP

             GRAS 191 leeLrvkp....gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                        +L++       Ea+aVnl +   ++ + +++ +s    vL +vk+l+Pk+vv  ++ +d+++ +F +++++al+ ys l++sl+a    + +
  Ciclev10019094m 525 SASLALPLrgleSEATAVNLPIG--TFCNYPATFPS----VLCFVKQLKPKIVVSLDRGCDRTDVPFPHHMIHALQSYSCLLESLDAV-NVNLD 611
                      666655544455*********95..55555777777....*********************************************665.35669 PP

             GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      + +k+Er+l+ + i+++v  ++ +     e+l  W++ ++++GF p+++s+++++qa++l+++++++g++ve+++ sl l+W++++L+ ++aWr
  Ciclev10019094m 612 ALQKIERFLVYPCIEKIVLGRHHS----PERLPPWKSLFMQSGFAPLTFSNFTESQADCLVQRTPVKGFHVEKRQSSLALCWQRKELILATAWR 701
                      99*****************99988....9****************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098545.548317681IPR005202Transcription factor GRAS
PfamPF035147.4E-98345701IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 703 aa     Download sequence    Send to blast
MPLAFEDFQG KGALDFSSSP SDSVLLLRQQ LKPKPKQNWL LNNPNRGGST TEPTSVLDNR  60
TSPSTPASSS TLSSSLVGGG GGGSSTTDTT GVAAANVSSN PPSVEINTAE KCGGLGMEDW  120
ESVLSGSPNQ EQSILRLIMG DIDDPSLGIN KILPQDMEFN AGFGVVDQAN FGFETSFTCT  180
NSLLGSNIDP DFVGNNARLG SVSNQSHIFS TAAAANLLPP PSVFQQQPVE ALDEKPQILN  240
SQLVINQNQA QYTQNPALFL PLSYAQMQEH QLLSPALPPP KRLNLGPNQK VPFPDSGEQE  300
LFLRRQQLQM LQQQRETMGV TATATKQKLV NDELANQQLQ QAITDQIFKA SELIETGNPV  360
HAQGILARLN HQLSPIGKPF QRAAFYFKEA LQLLLHMNMN NSSLALSGYS IIFKISAYKS  420
FSEISPILQF ANFTCNQALL EAFEGCNRIH IIDFDIGYGG QWASLMQELV LRSEGPPSLK  480
ITAFASPSTH DELELSFTRE NLKHFASEIN MPFELEILSL EALNSASLAL PLRGLESEAT  540
AVNLPIGTFC NYPATFPSVL CFVKQLKPKI VVSLDRGCDR TDVPFPHHMI HALQSYSCLL  600
ESLDAVNVNL DALQKIERFL VYPCIEKIVL GRHHSPERLP PWKSLFMQSG FAPLTFSNFT  660
ESQADCLVQR TPVKGFHVEK RQSSLALCWQ RKELILATAW RC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-3134970025378Protein SCARECROW
5b3h_A2e-3134970024377Protein SCARECROW
5b3h_D2e-3134970024377Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ5059570.0GQ505957.1 Citrus trifoliata cultivar Zhi SCL6 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006490865.10.0scarecrow-like protein 27
TrEMBLA0A067H1M90.0A0A067H1M9_CITSI; Uncharacterized protein
TrEMBLV4U3990.0V4U399_9ROSI; Uncharacterized protein
STRINGXP_006490865.10.0(Citrus sinensis)
STRINGXP_006445315.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM85742739
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-147GRAS family protein