PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10018794m

Common Name

CICLE_v10018794mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

FAR1

Protein Properties

Length: 889aa MW: 102484 Da PI: 6.117

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10018794m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	82.7	6.3e-26	77	163	1	88
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fYn+YA+ +GFsvrk+ ++sk +g++++r+f+Cs+eg+r++++++ + +++r+etrtgC a++ ++++ dgk++vt++e +HnH+ Ciclev10018794m 77 RFYNKYARVLGFSVRKDWANRSKVHGQVVSRKFTCSREGYRRKDRRD-MNVKKHRKETRTGCLAHMIITRQPDGKYRVTHFEANHNHD 163 5*****************************************999.9999*********************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.9E-23	77	163	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	8.8E-27	287	381	IPR018289	MULE transposase domain
Pfam	PF04434	3.2E-5	567	601	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	10.002	567	603	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.8E-5	578	605	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 889 aa Download sequence Send to blast
MPRSMNKDTD EFGTPLDEDT DSRLQTSNEL DLNVEQDSRS PKVIHATLPT LSSKEDANPD 60 GILKIGTQFE SDEHAYRFYN KYARVLGFSV RKDWANRSKV HGQVVSRKFT CSREGYRRKD 120 RRDMNVKKHR KETRTGCLAH MIITRQPDGK YRVTHFEANH NHDNIDPNND QIVQLQKELS 180 SAQAAEADLP DNLDLQSRAD FELMSGRFEV RDALDYLAMD YDFYLRSERV REMKEGEAGR 240 LLCYFQRQHI ENPPFFYSMQ LDIDDKVSNI FWANDNMVAA YDHFGDVVCL DTTCRTNRDF 300 QPFVQFVGVN HHNQAVTFAA AFLFDDTTES LKWLLRAFLE AMFGKKPKVI LTDQDATVVE 360 AISSVLPETD HRICLWQMYQ NTLRHLSHLV KDIKAFATSF RSCIYDQKDE EVFIQEWEAL 420 LGSYGLQQND WLKWMLRERE KWAVVYGRNT YFLDTKGSHV VESLSNKLKS CLSSDQDMLH 480 AFKHLERVVD EQRYKEFIAT DEMGRSTPRI MANVIMLKHA SDVYTTKAFE LFQREYEKCL 540 NVIVNQCCQN GSLSEFKVST FGQSREYRVT FNSSDNTVFC DCMKFEYVGF LCSHALKVLD 600 QRNIKVVPSQ YFLKRWTKEA RIGCTRDTSQ FIEHENSKLV AARRYKDLCS RMLNISASAA 660 DSEEAFLFAS RQLEEVIEGV EKILTSKPEE VQGITSSSTG ANASESENAE VCLDENTVED 720 QNEVGRAKWT KENKSCVPHR RKLKNIHGRS SKSRRVQNIQ AQSPNTVNCI SNPPPAFVSP 780 QAPTMESLYN LEANQVVQCM YGQPDLLVDQ QPNTDLYQQP NFFSDQHDSP GQTQLLEETL 840 IRSTYHDSVP ISTHLRQAME LDLQSSSFLL CDHSCRYRAS DPSYLEPK*

Sequence ? help Back to Top

Protein Sequence Length: 889 aa Download sequence Send to blast

MPRSMNKDTD EFGTPLDEDT DSRLQTSNEL DLNVEQDSRS PKVIHATLPT LSSKEDANPD  60
GILKIGTQFE SDEHAYRFYN KYARVLGFSV RKDWANRSKV HGQVVSRKFT CSREGYRRKD  120
RRDMNVKKHR KETRTGCLAH MIITRQPDGK YRVTHFEANH NHDNIDPNND QIVQLQKELS  180
SAQAAEADLP DNLDLQSRAD FELMSGRFEV RDALDYLAMD YDFYLRSERV REMKEGEAGR  240
LLCYFQRQHI ENPPFFYSMQ LDIDDKVSNI FWANDNMVAA YDHFGDVVCL DTTCRTNRDF  300
QPFVQFVGVN HHNQAVTFAA AFLFDDTTES LKWLLRAFLE AMFGKKPKVI LTDQDATVVE  360
AISSVLPETD HRICLWQMYQ NTLRHLSHLV KDIKAFATSF RSCIYDQKDE EVFIQEWEAL  420
LGSYGLQQND WLKWMLRERE KWAVVYGRNT YFLDTKGSHV VESLSNKLKS CLSSDQDMLH  480
AFKHLERVVD EQRYKEFIAT DEMGRSTPRI MANVIMLKHA SDVYTTKAFE LFQREYEKCL  540
NVIVNQCCQN GSLSEFKVST FGQSREYRVT FNSSDNTVFC DCMKFEYVGF LCSHALKVLD  600
QRNIKVVPSQ YFLKRWTKEA RIGCTRDTSQ FIEHENSKLV AARRYKDLCS RMLNISASAA  660
DSEEAFLFAS RQLEEVIEGV EKILTSKPEE VQGITSSSTG ANASESENAE VCLDENTVED  720
QNEVGRAKWT KENKSCVPHR RKLKNIHGRS SKSRRVQNIQ AQSPNTVNCI SNPPPAFVSP  780
QAPTMESLYN LEANQVVQCM YGQPDLLVDQ QPNTDLYQQP NFFSDQHDSP GQTQLLEETL  840
IRSTYHDSVP ISTHLRQAME LDLQSSSFLL CDHSCRYRAS DPSYLEPK*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006445005.1	0.0	protein FAR1-RELATED SEQUENCE 12 isoform X3
Refseq	XP_006491138.1	0.0	protein FAR1-RELATED SEQUENCE 12-like isoform X2
TrEMBL	V4U2J1	0.0	V4U2J1_9ROSI; Uncharacterized protein
STRING	XP_006491138.1	0.0	(Citrus sinensis)
STRING	XP_006445005.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-94	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Ciclev10018794m
Entrez Gene	18045999