PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10018767m

Common Name

CICLE_v10018744mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

Nin-like

Protein Properties

Length: 912aa MW: 100466 Da PI: 5.8003

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10018767m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.1	4e-29	504	554	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ Ciclev10018767m 504 EKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 554 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.575	493	574	IPR003035	RWP-RK domain
Pfam	PF02042	3.4E-26	507	554	IPR003035	RWP-RK domain
SuperFamily	SSF54277	3.92E-23	810	899	No hit	No description
PROSITE profile	PS51745	25.265	815	897	IPR000270	PB1 domain
SMART	SM00666	9.1E-26	815	897	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	2.1E-27	815	896	No hit	No description
CDD	cd06407	4.98E-39	816	896	No hit	No description
Pfam	PF00564	7.8E-19	816	896	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0010118	Biological Process	stomatal movement
GO:0010167	Biological Process	response to nitrate
GO:0042128	Biological Process	nitrate assimilation
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 912 aa Download sequence Send to blast
MLINTGNPNS ETENPKDNDE NRRFPSPLSA LMPLENPDGY CMIKERITQA LRYFKDSTEQ 60 HVLAQVWVPV KVGGRYVLTT SGQPFVLDPH SNGLHQYRMV SLMYMFSVDG ESDGELGLPG 120 RVFWQKLPEW TPNVQYYSSK EYSRLDHALH HNVRGTMALP VFEPSGQSCV AVIELIMTSQ 180 KINYAPEVDK VCKALEAVNL KSSEILDYPS TQICNEGRQN ALAEILEILS VVCETHKLPL 240 AQTWVPCRHR SVLAYGGGLK KSCSSIDGSC MGQVCMSTTD VAFYVVDGHM WGFREACVEH 300 HLQKDQGVAG RAFFSLSSCF CKDITQFCKT EYPLVHYARM FGLTSCFAIC LRSTYTGDDD 360 YILEFFLPPA ITDSYEQQTL LGSILATMKQ HFQSLKVASG IDLEDDEGTI EIIEGEATAD 420 KKLNLRMESI RIPQSVRSPP QPHALPNGGE LGQLDIPEQQ LMENFDYMNS RGNAVNVGGN 480 DNPVSLLENK NTRKPSERKR GKTEKSISLE VLQQYFAGSL KDAAKSLGVC PTTMKRICRQ 540 HGISRWPSRK INKVNRSLTK LKRVIESVQG TNGTFGLTSL TTSPLPVAVN SISWPSGLNG 600 SNQQNSPNSK PELLGEKILS PIYKTPGSDG HTELEDRLSG GRMSTHEEHI HEQNALSPEI 660 GKGKNSPKTG SGSREESAGS PTSHGSCQGN PANESAPAKD VLVSSIHEPR FKVGGSLELV 720 FQPVGEMNLS AAFSIPDALV TTEPQEPFGG LLVEDAGSSK DLRNLCPAVA DAIVDERLPE 780 NSCANLPCAE LSPKQHLATL SQTMPRVYSR QEMKSVTIKA TYREDIIRFR ISLSCGILEL 840 KEEVAKRLKL ELGTFDIKYL DDDQEWVLIA CDADLQECLD ISRSSGSNMI RLSIHDIMAN 900 LGSSCESTGE L*

Sequence ? help Back to Top

Protein Sequence Length: 912 aa Download sequence Send to blast

MLINTGNPNS ETENPKDNDE NRRFPSPLSA LMPLENPDGY CMIKERITQA LRYFKDSTEQ  60
HVLAQVWVPV KVGGRYVLTT SGQPFVLDPH SNGLHQYRMV SLMYMFSVDG ESDGELGLPG  120
RVFWQKLPEW TPNVQYYSSK EYSRLDHALH HNVRGTMALP VFEPSGQSCV AVIELIMTSQ  180
KINYAPEVDK VCKALEAVNL KSSEILDYPS TQICNEGRQN ALAEILEILS VVCETHKLPL  240
AQTWVPCRHR SVLAYGGGLK KSCSSIDGSC MGQVCMSTTD VAFYVVDGHM WGFREACVEH  300
HLQKDQGVAG RAFFSLSSCF CKDITQFCKT EYPLVHYARM FGLTSCFAIC LRSTYTGDDD  360
YILEFFLPPA ITDSYEQQTL LGSILATMKQ HFQSLKVASG IDLEDDEGTI EIIEGEATAD  420
KKLNLRMESI RIPQSVRSPP QPHALPNGGE LGQLDIPEQQ LMENFDYMNS RGNAVNVGGN  480
DNPVSLLENK NTRKPSERKR GKTEKSISLE VLQQYFAGSL KDAAKSLGVC PTTMKRICRQ  540
HGISRWPSRK INKVNRSLTK LKRVIESVQG TNGTFGLTSL TTSPLPVAVN SISWPSGLNG  600
SNQQNSPNSK PELLGEKILS PIYKTPGSDG HTELEDRLSG GRMSTHEEHI HEQNALSPEI  660
GKGKNSPKTG SGSREESAGS PTSHGSCQGN PANESAPAKD VLVSSIHEPR FKVGGSLELV  720
FQPVGEMNLS AAFSIPDALV TTEPQEPFGG LLVEDAGSSK DLRNLCPAVA DAIVDERLPE  780
NSCANLPCAE LSPKQHLATL SQTMPRVYSR QEMKSVTIKA TYREDIIRFR ISLSCGILEL  840
KEEVAKRLKL ELGTFDIKYL DDDQEWVLIA CDADLQECLD ISRSSGSNMI RLSIHDIMAN  900
LGSSCESTGE L*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. Detected in root hairs, emerging secondary roots, vascular tissues, leaf parenchyma cells and stomata. {ECO:0000269\|PubMed:18826430}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00449	DAP	Transfer from AT4G24020	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KX056270	0.0	KX056270.1 Citrus trifoliata transcription factor NLP7 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006439290.2	0.0	LOW QUALITY PROTEIN: protein NLP7
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	V4VIP8	0.0	V4VIP8_9ROSI; Uncharacterized protein
STRING	XP_006439290.1	0.0	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Link Out ? help Back to Top
Phytozome	Ciclev10018767m
Entrez Gene	18047473

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]