PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10018744m

Common Name

CICLE_v10018744mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

Nin-like

Protein Properties

Length: 944aa MW: 104105 Da PI: 5.6277

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10018744m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.1	4.2e-29	536	586	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ Ciclev10018744m 536 EKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 586 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.575	525	606	IPR003035	RWP-RK domain
Pfam	PF02042	3.6E-26	539	586	IPR003035	RWP-RK domain
SuperFamily	SSF54277	3.92E-23	842	931	No hit	No description
SMART	SM00666	9.1E-26	847	929	IPR000270	PB1 domain
PROSITE profile	PS51745	25.265	847	929	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	2.2E-27	847	928	No hit	No description
CDD	cd06407	5.53E-39	848	928	No hit	No description
Pfam	PF00564	8.2E-19	848	928	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0010118	Biological Process	stomatal movement
GO:0010167	Biological Process	response to nitrate
GO:0042128	Biological Process	nitrate assimilation
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 944 aa Download sequence Send to blast
MSPFLISEQP CSPLWAFSDA DNDDKLSGHV NYPLFLKCNP NSETENPKDN DENRRFPSPL 60 SALMPLENPD GYCMIKERIT QALRYFKDST EQHVLAQVWV PVKVGGRYVL TTSGQPFVLD 120 PHSNGLHQYR MVSLMYMFSV DGESDGELGL PGRVFWQKLP EWTPNVQYYS SKEYSRLDHA 180 LHHNVRGTMA LPVFEPSGQS CVAVIELIMT SQKINYAPEV DKVCKALEAV NLKSSEILDY 240 PSTQICNEGR QNALAEILEI LSVVCETHKL PLAQTWVPCR HRSVLAYGGG LKKSCSSIDG 300 SCMGQVCMST TDVAFYVVDG HMWGFREACV EHHLQKDQGV AGRAFFSLSS CFCKDITQFC 360 KTEYPLVHYA RMFGLTSCFA ICLRSTYTGD DDYILEFFLP PAITDSYEQQ TLLGSILATM 420 KQHFQSLKVA SGIDLEDDEG TIEIIEGEAT ADKKLNLRME SIRIPQSVRS PPQPHALPNG 480 GELGQLDIPE QQLMENFDYM NSRGNAVNVG GNDNPVSLLE NKNTRKPSER KRGKTEKSIS 540 LEVLQQYFAG SLKDAAKSLG VCPTTMKRIC RQHGISRWPS RKINKVNRSL TKLKRVIESV 600 QGTNGTFGLT SLTTSPLPVA VNSISWPSGL NGSNQQNSPN SKPELLGEKI LSPIYKTPGS 660 DGHTELEDRL SGGRMSTHEE HIHEQNALSP EIGKGKNSPK TGSGSREESA GSPTSHGSCQ 720 GNPANESAPA KDVLVSSIHE PRFKVGGSLE LVFQPVGEMN LSAAFSIPDA LVTTEPQEPF 780 GGLLVEDAGS SKDLRNLCPA VADAIVDERL PENSCANLPC AELSPKQHLA TLSQTMPRVY 840 SRQEMKSVTI KATYREDIIR FRISLSCGIL ELKEEVAKRL KLELGTFDIK YLDDDQEWVL 900 IACDADLQEC LDISRSSGSN MIRLSIHDIM ANLGSSCEST GEL*

Sequence ? help Back to Top

Protein Sequence Length: 944 aa Download sequence Send to blast

MSPFLISEQP CSPLWAFSDA DNDDKLSGHV NYPLFLKCNP NSETENPKDN DENRRFPSPL  60
SALMPLENPD GYCMIKERIT QALRYFKDST EQHVLAQVWV PVKVGGRYVL TTSGQPFVLD  120
PHSNGLHQYR MVSLMYMFSV DGESDGELGL PGRVFWQKLP EWTPNVQYYS SKEYSRLDHA  180
LHHNVRGTMA LPVFEPSGQS CVAVIELIMT SQKINYAPEV DKVCKALEAV NLKSSEILDY  240
PSTQICNEGR QNALAEILEI LSVVCETHKL PLAQTWVPCR HRSVLAYGGG LKKSCSSIDG  300
SCMGQVCMST TDVAFYVVDG HMWGFREACV EHHLQKDQGV AGRAFFSLSS CFCKDITQFC  360
KTEYPLVHYA RMFGLTSCFA ICLRSTYTGD DDYILEFFLP PAITDSYEQQ TLLGSILATM  420
KQHFQSLKVA SGIDLEDDEG TIEIIEGEAT ADKKLNLRME SIRIPQSVRS PPQPHALPNG  480
GELGQLDIPE QQLMENFDYM NSRGNAVNVG GNDNPVSLLE NKNTRKPSER KRGKTEKSIS  540
LEVLQQYFAG SLKDAAKSLG VCPTTMKRIC RQHGISRWPS RKINKVNRSL TKLKRVIESV  600
QGTNGTFGLT SLTTSPLPVA VNSISWPSGL NGSNQQNSPN SKPELLGEKI LSPIYKTPGS  660
DGHTELEDRL SGGRMSTHEE HIHEQNALSP EIGKGKNSPK TGSGSREESA GSPTSHGSCQ  720
GNPANESAPA KDVLVSSIHE PRFKVGGSLE LVFQPVGEMN LSAAFSIPDA LVTTEPQEPF  780
GGLLVEDAGS SKDLRNLCPA VADAIVDERL PENSCANLPC AELSPKQHLA TLSQTMPRVY  840
SRQEMKSVTI KATYREDIIR FRISLSCGIL ELKEEVAKRL KLELGTFDIK YLDDDQEWVL  900
IACDADLQEC LDISRSSGSN MIRLSIHDIM ANLGSSCEST GEL*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. Detected in root hairs, emerging secondary roots, vascular tissues, leaf parenchyma cells and stomata. {ECO:0000269\|PubMed:18826430}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00449	DAP	Transfer from AT4G24020	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KX056270	0.0	KX056270.1 Citrus trifoliata transcription factor NLP7 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006439290.2	0.0	LOW QUALITY PROTEIN: protein NLP7
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	V4TLI6	0.0	V4TLI6_9ROSI; Uncharacterized protein
STRING	XP_006439290.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2507	26	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Link Out ? help Back to Top
Phytozome	Ciclev10018744m
Entrez Gene	18047473

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]