PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10018673m

Common Name

CICLE_v10018669mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

Nin-like

Protein Properties

Length: 1008aa MW: 110295 Da PI: 5.4318

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10018673m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.7	2.7e-29	595	646	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ Ciclev10018673m 595 AEKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 646 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.745	585	666	IPR003035	RWP-RK domain
Pfam	PF02042	2.6E-26	598	646	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.68E-23	894	984	No hit	No description
Gene3D	G3DSA:3.10.20.240	3.4E-24	897	978	No hit	No description
PROSITE profile	PS51745	23.136	899	981	IPR000270	PB1 domain
SMART	SM00666	5.7E-23	899	981	IPR000270	PB1 domain
CDD	cd06407	2.25E-33	900	980	No hit	No description
Pfam	PF00564	3.0E-17	902	980	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1008 aa Download sequence Send to blast
MEHPFSPKEK GTGYWASPRA PMEPLDCGTR NSNSGDLFNN FSDLLNFDAY AGWCNSPSVT 60 DQMFASYGFS SFQSTPCASF DTSNVMASNS SVASEGGGTS NAMESSFDRG DRIGFQQTST 120 DCYPINTNDA DDLVPKQSSG VYRENNTNMS NSMICRPVPP SLDEKMLRAL SFFKLSSGGG 180 ILAQVWVPRK QGDDYILSTS DQPYLLDQML AGYREVSRKF TFSAEAKPGT FLGLPGRVFS 240 SKVPEWTSNV AYYNEAEYAR VTHAVNHAVR SCIALPVFQF PEMSCSAVLE IVSVKEKPNF 300 DAEIENICNA LQAVNLRTTA PPRLLPQNIS RNQKAALAEI TDVLRAVCHA HRLPLALTWI 360 PCNYDEEAVD EVIKVRVRHS NTSSDGKSVL CIEGTACYVN DSDMQGFVHA CSEHYLEEGQ 420 GVAGKALQSN HPFFFPDVKL YDITEFPLVH HARKFGLNAA VAIRLRSTYT GDDDYILEFF 480 LPVTIKGSSE QQLLLNNLSG TMQRMCRSLR TVSDAELIQD EGSKFGFQKE VVSNFPPMVM 540 SRRNSQSALL DSDFNSIEKI TLSVSNSKSG LEADGPPEQV MSGSRRHMEK KRSTAEKNVS 600 LSVLQQYFSG SLKDAAKSIG VCPTTLKRIC RQHGISRWPS RKINKVNRSL KKIQTVLNSV 660 QGVEGGLKFD PTTGGFVAAG SIIQEFDAQK SSLHPDKNMP VRNSESITKD STSIPPTLSI 720 DGEKFVVKVE EDECSVDKNQ VGPLSMLIQN SSKGELNKSS VNLIDCSEDS KLILTDAGPF 780 WQARLGTAAW DSPDTASMVS YYAKGGEKGA RSKNGLQLES SDCHFVSQSS NSLAAADNMD 840 TRREGDDGII ENNQPTTSST TDSSNGSGSL AHASSVSSPS FEEGKHLKIH PGSDDIGSKI 900 IVKATYKEDI IRFKFDPSAG CFQLYEEVAR RLKLQNGTFQ LKYLDDEEEW VMLVSDSDLQ 960 ECFDILESLG KRSVRFLVRD ISCNVGSSGS SNCFLAGSSS CFLAGVS*

Sequence ? help Back to Top

Protein Sequence Length: 1008 aa Download sequence Send to blast

MEHPFSPKEK GTGYWASPRA PMEPLDCGTR NSNSGDLFNN FSDLLNFDAY AGWCNSPSVT  60
DQMFASYGFS SFQSTPCASF DTSNVMASNS SVASEGGGTS NAMESSFDRG DRIGFQQTST  120
DCYPINTNDA DDLVPKQSSG VYRENNTNMS NSMICRPVPP SLDEKMLRAL SFFKLSSGGG  180
ILAQVWVPRK QGDDYILSTS DQPYLLDQML AGYREVSRKF TFSAEAKPGT FLGLPGRVFS  240
SKVPEWTSNV AYYNEAEYAR VTHAVNHAVR SCIALPVFQF PEMSCSAVLE IVSVKEKPNF  300
DAEIENICNA LQAVNLRTTA PPRLLPQNIS RNQKAALAEI TDVLRAVCHA HRLPLALTWI  360
PCNYDEEAVD EVIKVRVRHS NTSSDGKSVL CIEGTACYVN DSDMQGFVHA CSEHYLEEGQ  420
GVAGKALQSN HPFFFPDVKL YDITEFPLVH HARKFGLNAA VAIRLRSTYT GDDDYILEFF  480
LPVTIKGSSE QQLLLNNLSG TMQRMCRSLR TVSDAELIQD EGSKFGFQKE VVSNFPPMVM  540
SRRNSQSALL DSDFNSIEKI TLSVSNSKSG LEADGPPEQV MSGSRRHMEK KRSTAEKNVS  600
LSVLQQYFSG SLKDAAKSIG VCPTTLKRIC RQHGISRWPS RKINKVNRSL KKIQTVLNSV  660
QGVEGGLKFD PTTGGFVAAG SIIQEFDAQK SSLHPDKNMP VRNSESITKD STSIPPTLSI  720
DGEKFVVKVE EDECSVDKNQ VGPLSMLIQN SSKGELNKSS VNLIDCSEDS KLILTDAGPF  780
WQARLGTAAW DSPDTASMVS YYAKGGEKGA RSKNGLQLES SDCHFVSQSS NSLAAADNMD  840
TRREGDDGII ENNQPTTSST TDSSNGSGSL AHASSVSSPS FEEGKHLKIH PGSDDIGSKI  900
IVKATYKEDI IRFKFDPSAG CFQLYEEVAR RLKLQNGTFQ LKYLDDEEEW VMLVSDSDLQ  960
ECFDILESLG KRSVRFLVRD ISCNVGSSGS SNCFLAGSSS CFLAGVS*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ccl.12377	0.0	fruit

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KX056271	0.0	KX056271.1 Citrus trifoliata transcription factor NLP8 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006442936.1	0.0	protein NLP9 isoform X2
Refseq	XP_015386041.1	0.0	protein NLP9-like isoform X2
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	V4U230	0.0	V4U230_9ROSI; Uncharacterized protein
STRING	XP_006478830.1	0.0	(Citrus sinensis)
STRING	XP_006442937.1	0.0	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Ciclev10018673m
Entrez Gene	18047979

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]