PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10018669m

Common Name

CICLE_v10018669mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

Nin-like

Protein Properties

Length: 1013aa MW: 110810 Da PI: 5.3613

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10018669m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.7	2.7e-29	600	651	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ Ciclev10018669m 600 AEKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 651 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.745	590	671	IPR003035	RWP-RK domain
Pfam	PF02042	2.7E-26	603	651	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.68E-23	899	989	No hit	No description
Gene3D	G3DSA:3.10.20.240	3.4E-24	902	983	No hit	No description
SMART	SM00666	5.7E-23	904	986	IPR000270	PB1 domain
PROSITE profile	PS51745	23.136	904	986	IPR000270	PB1 domain
CDD	cd06407	2.34E-33	905	985	No hit	No description
Pfam	PF00564	3.1E-17	907	985	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1013 aa Download sequence Send to blast
MEHPFSPKEK GTGYWASPRA PMEPLDCGTR NSNSGDLFNN FSDLLNFDAY AGWCNSPSVT 60 DQMFASYGFS SFQSTPCASF DTSNVMASNS SVASEGGGTS NAMESSFDRG DRIGFQQTST 120 DCYPINTNDA DDLVPKQSSG VYRENNTNMS NSMICRPVPP SLDEKMLRAL SFFKLSSGGG 180 ILAQVWVPRK QGDDYILSTS DQPYLLDQML AGYREVSRKF TFSAEAKPGT FLGLPGRVFS 240 SKVPEWTSNV AYYNEAEYAR VTHAVNHAVR SCIALPVFQF PEMSCSAVLE IVSVKEKPNF 300 DAEIENICNA LQAVNLRTTA PPRLLPQVSS ELNISRNQKA ALAEITDVLR AVCHAHRLPL 360 ALTWIPCNYD EEAVDEVIKV RVRHSNTSSD GKSVLCIEGT ACYVNDSDMQ GFVHACSEHY 420 LEEGQGVAGK ALQSNHPFFF PDVKLYDITE FPLVHHARKF GLNAAVAIRL RSTYTGDDDY 480 ILEFFLPVTI KGSSEQQLLL NNLSGTMQRM CRSLRTVSDA ELIQDEGSKF GFQKEVVSNF 540 PPMVMSRRNS QSALLDSDFN SIEKITLSVS NSKSGLEADG PPEQVMSGSR RHMEKKRSTA 600 EKNVSLSVLQ QYFSGSLKDA AKSIGVCPTT LKRICRQHGI SRWPSRKINK VNRSLKKIQT 660 VLNSVQGVEG GLKFDPTTGG FVAAGSIIQE FDAQKSSLHP DKNMPVRNSE SITKDSTSIP 720 PTLSIDGEKF VVKVEEDECS VDKNQVGPLS MLIQNSSKGE LNKSSVNLID CSEDSKLILT 780 DAGPFWQARL GTAAWDSPDT ASMVSYYAKG GEKGARSKNG LQLESSDCHF VSQSSNSLAA 840 ADNMDTRREG DDGIIENNQP TTSSTTDSSN GSGSLAHASS VSSPSFEEGK HLKIHPGSDD 900 IGSKIIVKAT YKEDIIRFKF DPSAGCFQLY EEVARRLKLQ NGTFQLKYLD DEEEWVMLVS 960 DSDLQECFDI LESLGKRSVR FLVRDISCNV GSSGSSNCFL AGSSSCFLAG VS*

Sequence ? help Back to Top

Protein Sequence Length: 1013 aa Download sequence Send to blast

MEHPFSPKEK GTGYWASPRA PMEPLDCGTR NSNSGDLFNN FSDLLNFDAY AGWCNSPSVT  60
DQMFASYGFS SFQSTPCASF DTSNVMASNS SVASEGGGTS NAMESSFDRG DRIGFQQTST  120
DCYPINTNDA DDLVPKQSSG VYRENNTNMS NSMICRPVPP SLDEKMLRAL SFFKLSSGGG  180
ILAQVWVPRK QGDDYILSTS DQPYLLDQML AGYREVSRKF TFSAEAKPGT FLGLPGRVFS  240
SKVPEWTSNV AYYNEAEYAR VTHAVNHAVR SCIALPVFQF PEMSCSAVLE IVSVKEKPNF  300
DAEIENICNA LQAVNLRTTA PPRLLPQVSS ELNISRNQKA ALAEITDVLR AVCHAHRLPL  360
ALTWIPCNYD EEAVDEVIKV RVRHSNTSSD GKSVLCIEGT ACYVNDSDMQ GFVHACSEHY  420
LEEGQGVAGK ALQSNHPFFF PDVKLYDITE FPLVHHARKF GLNAAVAIRL RSTYTGDDDY  480
ILEFFLPVTI KGSSEQQLLL NNLSGTMQRM CRSLRTVSDA ELIQDEGSKF GFQKEVVSNF  540
PPMVMSRRNS QSALLDSDFN SIEKITLSVS NSKSGLEADG PPEQVMSGSR RHMEKKRSTA  600
EKNVSLSVLQ QYFSGSLKDA AKSIGVCPTT LKRICRQHGI SRWPSRKINK VNRSLKKIQT  660
VLNSVQGVEG GLKFDPTTGG FVAAGSIIQE FDAQKSSLHP DKNMPVRNSE SITKDSTSIP  720
PTLSIDGEKF VVKVEEDECS VDKNQVGPLS MLIQNSSKGE LNKSSVNLID CSEDSKLILT  780
DAGPFWQARL GTAAWDSPDT ASMVSYYAKG GEKGARSKNG LQLESSDCHF VSQSSNSLAA  840
ADNMDTRREG DDGIIENNQP TTSSTTDSSN GSGSLAHASS VSSPSFEEGK HLKIHPGSDD  900
IGSKIIVKAT YKEDIIRFKF DPSAGCFQLY EEVARRLKLQ NGTFQLKYLD DEEEWVMLVS  960
DSDLQECFDI LESLGKRSVR FLVRDISCNV GSSGSSNCFL AGSSSCFLAG VS*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ccl.12377	0.0	fruit

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KX056271	0.0	KX056271.1 Citrus trifoliata transcription factor NLP8 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006442938.1	0.0	protein NLP9 isoform X1
Refseq	XP_006478831.1	0.0	protein NLP9-like isoform X1
Refseq	XP_006478832.1	0.0	protein NLP9-like isoform X1
Refseq	XP_015386040.1	0.0	protein NLP9-like isoform X1
Refseq	XP_024043638.1	0.0	protein NLP9 isoform X1
Refseq	XP_024043639.1	0.0	protein NLP9 isoform X1
Refseq	XP_024955270.1	0.0	protein NLP9-like isoform X1
Refseq	XP_024955271.1	0.0	protein NLP9-like isoform X1
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	V4T7F0	0.0	V4T7F0_9ROSI; Uncharacterized protein
STRING	XP_006478830.1	0.0	(Citrus sinensis)
STRING	XP_006442937.1	0.0	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Ciclev10018669m
Entrez Gene	18047979

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]