PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10018607m
Common NameCICLE_v10018607mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NF-X1
Protein Properties Length: 1102aa    MW: 119584 Da    PI: 8.0637
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10018607mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X117.49.4e-06295311319
         zf-NF-X1   3 kHkCqklCHeGpCppCp 19 
                      +HkC+k+CH GpC+pC+
  Ciclev10018607m 295 RHKCEKICHVGPCGPCW 311
                      8***************7 PP
2zf-NF-X116.32.2e-05357374118
         zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                      CG+H+C+++CH+GpC+ C
  Ciclev10018607m 357 CGHHSCGEICHPGPCGDC 374
                      ****************99 PP
3zf-NF-X123.61.1e-07415433119
         zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                      CG H C +lCH G+CppC 
  Ciclev10018607m 415 CGLHYCDELCHAGNCPPCL 433
                      ******************6 PP
4zf-NF-X118.64e-06510528119
         zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                      CG+H+C++lCH G CppC 
  Ciclev10018607m 510 CGQHSCESLCHSGHCPPCL 528
                      ******************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578506.71E-7115185No hitNo description
PROSITE profilePS500168.707123184IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590126181IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500899.465126182IPR001841Zinc finger, RING-type
CDDcd060088.83E-6215276No hitNo description
SMARTSM004380.018238256IPR000967Zinc finger, NF-X1-type
PfamPF014221240255IPR000967Zinc finger, NF-X1-type
CDDcd060086.34E-10283331No hitNo description
SMARTSM004388.6E-5293312IPR000967Zinc finger, NF-X1-type
PfamPF014229.7E-4295311IPR000967Zinc finger, NF-X1-type
CDDcd060082.70E-9347390No hitNo description
PfamPF014220.07357374IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0078357376IPR000967Zinc finger, NF-X1-type
CDDcd060087.71E-13405453No hitNo description
PfamPF014224.7E-6415432IPR000967Zinc finger, NF-X1-type
SMARTSM004383.3E-5415434IPR000967Zinc finger, NF-X1-type
PfamPF0142218472483IPR000967Zinc finger, NF-X1-type
SMARTSM00438210472506IPR000967Zinc finger, NF-X1-type
CDDcd060088.95E-9500544No hitNo description
PfamPF014229.8E-5510527IPR000967Zinc finger, NF-X1-type
SMARTSM004382.0E-4510529IPR000967Zinc finger, NF-X1-type
CDDcd060081.39E-5557605No hitNo description
PfamPF014222.6567584IPR000967Zinc finger, NF-X1-type
SMARTSM004380.026567585IPR000967Zinc finger, NF-X1-type
PfamPF014220.084620638IPR000967Zinc finger, NF-X1-type
SMARTSM004380.49620640IPR000967Zinc finger, NF-X1-type
PfamPF0142235652678IPR000967Zinc finger, NF-X1-type
SMARTSM004380.08659680IPR000967Zinc finger, NF-X1-type
Gene3DG3DSA:3.30.70.3301.3E-4896947IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0000166Molecular Functionnucleotide binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1102 aa     Download sequence    Send to blast
MSSDRRDGTR NPARSARQEW VPRGSPARVV NPPPQSINPN TMNGVVENSR NMPTPDDNQH  60
SRNMPTPDDN QHSRNIAPRV QNGQFTNHHR GRARGENQDK KLPKDLDLPQ LLQEIQDKLM  120
KSKVECMICY DMVKRSAPIW SCSSCFSIFH LSCIKKWARA PTSADLSAER SQGFNWRCPG  180
CQSVQLTSSK EIRYVCFCGK RTDPTSDFYL TPHSCGEPCG KPLESKISSA GGSEEDLCPH  240
KCVLQCHPGP CPPCKAFAPP RLCPCGKKMI TTRCFDRKSV LTCGQHCNKH LECWRHKCEK  300
ICHVGPCGPC WVLVNASCFC KKKVEVVLCG DMAVKGEVKA EAGVFSCSST CGKKLSCGHH  360
SCGEICHPGP CGDCELLPSK IKSCFCGKMS LQEQRKSCLD PIPACSEKCG KPLACGLHYC  420
DELCHAGNCP PCLAAVTQKC RCGSTSRNVE CYRTTGGENF TCEKACGRKK NCGRHRCSER  480
CCPLSSSNSL LSGDWDPHFC QMACGKKLRC GQHSCESLCH SGHCPPCLET IFTDLTCACG  540
RTSFPPPLPC GTPPPSCQLP CSVPQPCGHS ASHSCHFGDC PPCSVPIAKE CIGGHVVLRN  600
VPCGSKDIRC NKLCGKTRQC GMHACGRTCH PPPCDTACYS EPGSKASCGQ VCGAPRRDCR  660
HTCTALCHPS ALCPDVRCEF PVTINCSCGR ITASVPCDAG GSSSGYSSDT VYEASIVQKL  720
PAPLQPVEST GKKIPLGQRK LMCDDECAKL ERKRVLADAF EITTPNLDAL HFGESAVTEL  780
LADLYRRDPK WVLSVEERCK FLVLGKNRGS TNALKVHVFC PMLKDKRDAV RLIAERWKLA  840
VNPAGWEPKR FIVVHVTPKS KPPPRVIGVK GATTVNAPHA PVFDPLVDMD PRLVVSFLDL  900
PRESDISALV LRFGGECELV WLNDKNALAV FSDPARAATA TRRLDHGSVY YGAVVVQNVG  960
APSTANAWGG PGTVKEVGAL SSQRGNPWKK AVVQEMAWRE DSWGEEESSA GSGDVQASAW  1020
KNKEAPIAAS INRWSVLDSE TLSYSSPVSI RTEEPAKQSA SQSNKGGESN ASSVNVAGQP  1080
ASSFSETELS EVVDDWEKAY D*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaves, buds, flowers and siliques. {ECO:0000269|PubMed:16905136}.
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006440984.10.0NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLV4VN000.0V4VN00_9ROSI; Uncharacterized protein
STRINGXP_006440984.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59552647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1