PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10018310m | ||||||||
Common Name | CICLE_v10018310mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | FAR1 | ||||||||
Protein Properties | Length: 194aa MW: 21863 Da PI: 9.9192 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 45.5 | 2.6e-14 | 1 | 65 | 10 | 90 |
FAR1 10 vGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 vGFsvr+++s+ks ++gei+++++vCskeg +++ + gCkakl v k+k+g+++v+ +e++HnH+l+ Ciclev10018310m 1 VGFSVRINSSRKS-HTGEIVRKEYVCSKEGATTK---------------ELGCKAKLAVVKSKSGTYVVSVFEEDHNHPLT 65 7**********99.8899************8776...............47****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.6E-11 | 1 | 65 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
VGFSVRINSS RKSHTGEIVR KEYVCSKEGA TTKELGCKAK LAVVKSKSGT YVVSVFEEDH 60 NHPLTTPRRV HLLRSYRNVS EAKRSLTHQL AAANIPIHQQ ISVLELQAGG MQNIGCLGKD 120 LYNDETKSKN KVKGHDADML LEHFELEKEK NSAFTYTIES DNENRITHCF WADATSRRVL 180 LLKKRECRRA LKP* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015389930.1 | 1e-121 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | V4U9P8 | 1e-141 | V4U9P8_9ROSI; Uncharacterized protein (Fragment) | ||||
STRING | XP_006449442.1 | 1e-142 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM118 | 26 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 3e-24 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10018310m |
Entrez Gene | 18053404 |