PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10018009m
Common NameCICLE_v10018009mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB
Protein Properties Length: 339aa    MW: 38009.8 Da    PI: 6.5629
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10018009mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.12e-181360148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEde+l++ v+ +G g+W+++++  g+ R++k+c++rw +yl
  Ciclev10018009m 13 RGLWSPEEDEKLIKHVTTHGHGSWSSVPKLAGLQRCGKSCRLRWINYL 60
                     788*******************************************97 PP
2Myb_DNA-binding52.41.2e-1666109146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++T++E+ +++d ++ lG++ W+ Ia++++ gRt++++k++w++
  Ciclev10018009m  66 RGSFTEQEERIIIDIHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 109
                      89********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.3E-27563IPR009057Homeodomain-like
PROSITE profilePS5129418.689860IPR017930Myb domain
SuperFamilySSF466895.31E-3010107IPR009057Homeodomain-like
SMARTSM007173.0E-131262IPR001005SANT/Myb domain
PfamPF002493.1E-161360IPR001005SANT/Myb domain
CDDcd001671.24E-111660No hitNo description
PROSITE profilePS5129425.9561115IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-2564116IPR009057Homeodomain-like
SMARTSM007175.3E-1665113IPR001005SANT/Myb domain
PfamPF002494.3E-1566109IPR001005SANT/Myb domain
CDDcd001675.08E-1268108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MGHNCCSKQK VKRGLWSPEE DEKLIKHVTT HGHGSWSSVP KLAGLQRCGK SCRLRWINYL  60
RPDLKRGSFT EQEERIIIDI HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLIARGI  120
DPNTHNLISP TSCAQIYTNS TYSNACNKLP HQVQLSNSPV FLADSHMKEI IKSPHLTSPF  180
NNVSSLDLIN TTQYSISPSI LHEISSLLPA SEYQNPNQFW TLPEQNPHAS SMESANPCGF  240
GLIDENNGLL GGSFFEITET DAGKETMLQP LMIDAQQEKV CEVGNGKITN ELNDNGQNMN  300
ASFERADFDF DDHLVESTAL SCGMYCNFSP IMNQFAWD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-33131157108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006448584.10.0transcription factor MYB86
TrEMBLA0A2H5P9K70.0A0A2H5P9K7_CITUN; Uncharacterized protein
TrEMBLV4W6S30.0V4W6S3_9ROSI; Uncharacterized protein
STRINGXP_006448584.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79552539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.18e-83myb domain protein 67