PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10017494m | ||||||||
Common Name | CICLE_v10017494mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | ERF | ||||||||
Protein Properties | Length: 283aa MW: 30943.2 Da PI: 5.2413 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.7 | 3.5e-19 | 29 | 77 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + GVr+++ +gr++AeIrdps+ + r++lg+f+taeeAa a+++a+++++g Ciclev10017494m 29 FLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTAEEAALAYDRAARSMRG 77 67******.**********965...5*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 2.1E-34 | 28 | 91 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.6E-29 | 28 | 85 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.784 | 28 | 85 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.93E-31 | 28 | 84 | No hit | No description |
PRINTS | PR00367 | 3.6E-8 | 29 | 40 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.4E-21 | 29 | 86 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 4.8E-12 | 31 | 77 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-8 | 51 | 67 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0010030 | Biological Process | positive regulation of seed germination | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 283 aa Download sequence Send to blast |
MNSSSSTKIK KKQTQQGQDT TGGSSGNRFL GVRRRPWGRY AAEIRDPSTK ERHWLGTFDT 60 AEEAALAYDR AARSMRGPRA RTNFVYSDMP PGSSVTSIIS PDEPQQQHQY SFHIPSPNSH 120 PRSEPNLQHQ PFLNQDFSSG FSSTFPNVND DHYSHNNNAL SYSYTYDDNN SNSTELPPLP 180 SDLSAYAGYS TDSNVMSHSS YDELGQGAWS TSESSANLMG FCEPSSVTSN NGFDTMGSGS 240 GGSYFGFDSS DYVQHSPLFS SMPPVSDTVP DGFHLGSSSY FF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-20 | 24 | 84 | 1 | 62 | ATERF1 |
3gcc_A | 4e-20 | 24 | 84 | 1 | 62 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00509 | DAP | Transfer from AT5G13910 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024951335.1 | 0.0 | ethylene-responsive transcription factor LEP | ||||
TrEMBL | V4U2Q6 | 0.0 | V4U2Q6_9ROSI; Uncharacterized protein | ||||
STRING | XP_006446887.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13910.1 | 4e-41 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10017494m |
Entrez Gene | 18051344 |