PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Ciclev10016982m | ||||||||
Common Name | CICLE_v10016982mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 169aa MW: 18593.8 Da PI: 9.9645 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.1 | 2.8e-20 | 8 | 58 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr ++ +gr++AeIrd ++ ++r++lg+f+t+eeAa a++ a+++l+g+ Ciclev10016982m 8 HYRGVRKRP-WGRYAAEIRDpWK----KTRVWLGTFDTPEEAALAYDGAARSLRGA 58 69*******.**********883....5*************************995 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.80E-29 | 8 | 66 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 7.1E-32 | 8 | 65 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.721 | 8 | 65 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.16E-22 | 8 | 66 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.8E-13 | 8 | 57 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.3E-36 | 8 | 71 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.8E-11 | 9 | 20 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.8E-11 | 31 | 47 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 169 aa Download sequence Send to blast |
MASSREGHYR GVRKRPWGRY AAEIRDPWKK TRVWLGTFDT PEEAALAYDG AARSLRGAKA 60 KTNFPAPVTN SLPLDLNAPS DTNTSNQHRW ITPGHHRHQR FGFCEFLQTG VLKEINFADR 120 QATSASAQTD AAVIDGAPVA DNGSTPSFFG IVRRGLPIDL NEPPPLWL* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-21 | 8 | 70 | 5 | 68 | ATERF1 |
3gcc_A | 1e-21 | 8 | 70 | 5 | 68 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00645 | PBM | Transfer from LOC_Os05g41760 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | FJ544914 | 0.0 | FJ544914.1 Citrus unshiu putative ethylene responsive element binding protein 1 (EREBP1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006449387.1 | 1e-122 | ethylene-responsive transcription factor 12 | ||||
Refseq | XP_006467752.1 | 1e-122 | ethylene-responsive transcription factor 12 | ||||
Swissprot | Q94ID6 | 3e-50 | ERF81_ARATH; Ethylene-responsive transcription factor 12 | ||||
TrEMBL | A0A067GG80 | 1e-121 | A0A067GG80_CITSI; Uncharacterized protein | ||||
TrEMBL | B8YM26 | 1e-121 | B8YM26_CITUN; Putative ethylene responsive element binding protein 1 | ||||
TrEMBL | V4U9J0 | 1e-121 | V4U9J0_9ROSI; Uncharacterized protein | ||||
STRING | XP_006467752.1 | 1e-122 | (Citrus sinensis) | ||||
STRING | XP_006449387.1 | 1e-122 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G28360.1 | 4e-50 | ERF domain protein 12 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Ciclev10016982m |
Entrez Gene | 18053449 |