PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10016668m
Common NameCICLE_v10016668mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 216aa    MW: 23655.7 Da    PI: 9.3752
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10016668mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.62e-202877255
              AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     +y+GVr ++ +gr++AeIrd ++    ++r++lg+f++ae+Aa+a++aa+++l+g
  Ciclev10016668m 28 RYRGVRKRP-WGRFAAEIRDpWK----KTRVWLGTFDSAEDAARAYDAAARSLRG 77
                     59*******.**********883....5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.6962885IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-322886IPR001471AP2/ERF domain
CDDcd000183.09E-182885No hitNo description
SMARTSM003802.0E-372891IPR001471AP2/ERF domain
PfamPF008472.9E-132877IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-222887IPR016177DNA-binding domain
PRINTSPR003678.1E-112940IPR001471AP2/ERF domain
PRINTSPR003678.1E-115167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MRRGRSTAAA PSKPIEKRTG PEASPDIRYR GVRKRPWGRF AAEIRDPWKK TRVWLGTFDS  60
AEDAARAYDA AARSLRGPKA KTNFPLNISD SFNAPIREEN GGFCKFDSVV QVNRPTTSSM  120
SSTVESFSGP RPANQLAPPR LQQQQQKKIV VQPAAGDDCR SDCDSSSSVI DDGDDCVFSS  180
SLFRKVLPFD LNLPPPPPPP MMTLMDGGDD LRLCL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-212989667ATERF1
3gcc_A2e-212989667ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.17970.0flower
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways and could also regulate other AtERFs. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:9756931}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA), ethylene and Alternaria brassicicola (locally and systemically). Moderate induction by wounding or drought stress does not require EIN2, whereas induction by NaCl does. Transcripts accumulate slightly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by ethylene, exogenous abscisic acid (ABA), cold and heat stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006469596.11e-155ethylene-responsive transcription factor 3-like
RefseqXP_024047278.11e-155ethylene-responsive transcription factor 3
SwissprotO803396e-38ERF82_ARATH; Ethylene-responsive transcription factor 3
TrEMBLV4W4F81e-154V4W4F8_9ROSI; Uncharacterized protein
STRINGXP_006469596.11e-155(Citrus sinensis)
STRINGXP_006447664.11e-155(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.11e-25ethylene responsive element binding factor 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]