PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10016654m | ||||||||
Common Name | CICLE_v10016654mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | FAR1 | ||||||||
Protein Properties | Length: 218aa MW: 25199.8 Da PI: 9.6664 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 97.2 | 1.9e-30 | 48 | 135 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY++YA+++GF +r+++ ++s r+g++++r++vC+keg+r+ + ++ +++r++ra+tr gCka+++vkkek+gkw+vt++++eHnH+l+ Ciclev10016654m 48 FYDAYATHMGFIMRVDAFRRSMRDGKVVWRRLVCNKEGFRKLRPRR-SENRKPRAVTREGCKAMIVVKKEKTGKWVVTRFVKEHNHPLV 135 9*******************************************99.9***************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.4E-28 | 48 | 135 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MDENPSTGQN EEMMENVNDQ EMAVTKGSLD GEPYLGMEFE SEEAAKVFYD AYATHMGFIM 60 RVDAFRRSMR DGKVVWRRLV CNKEGFRKLR PRRSENRKPR AVTREGCKAM IVVKKEKTGK 120 WVVTRFVKEH NHPLVAIPAN GRRSVLLSQT PDEKDVKIRE LTAELQRERK RSAAYQEQLE 180 MVLRDMENHS HHLSRNIDDI VQSVKQIEAK RIAASHC* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006447969.1 | 1e-162 | protein FAR1-RELATED SEQUENCE 1 | ||||
Refseq | XP_006492211.1 | 1e-162 | protein FAR1-RELATED SEQUENCE 1 | ||||
TrEMBL | V4W588 | 1e-161 | V4W588_9ROSI; Uncharacterized protein | ||||
STRING | XP_006492211.1 | 1e-162 | (Citrus sinensis) | ||||
STRING | XP_006447969.1 | 1e-162 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13524 | 22 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07500.1 | 1e-93 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10016654m |
Entrez Gene | 18051657 |