PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10016463m | ||||||||
Common Name | CICLE_v10016463mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | ERF | ||||||||
Protein Properties | Length: 242aa MW: 26181.9 Da PI: 9.0011 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.2 | 1.3e-20 | 25 | 75 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +++GVr ++ +gr++AeIrdp gk+ r++lg+f+taeeAa+a++aa+++++g+ Ciclev10016463m 25 HFRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAARAYDAAAREFRGA 75 69*******.**********8...557*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.8E-32 | 25 | 82 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.98E-18 | 25 | 82 | No hit | No description |
SMART | SM00380 | 1.3E-39 | 25 | 88 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.8E-14 | 25 | 74 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.7E-22 | 25 | 83 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.894 | 25 | 82 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.0E-11 | 26 | 37 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.0E-11 | 48 | 64 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MAPREKASGP VKVNGNSNGI VKEVHFRGVR KRPWGRYAAE IRDPGKKSRV WLGTFDTAEE 60 AARAYDAAAR EFRGAKAKTN FPLPSENVTN KISHNNININ NNNQSPSQSS TIESSSREPA 120 LMIDSSPLDL NLGPACAGGG AGGGFNATIR FPFQPVGGSF GAANQVFYFD PVAAMKSQQY 180 QRLRFDHHRN YNFHAAAVTA VGDGSVQSDS DSSSIVDLNH HDDKPRRVLD IDLNLPPEDF 240 A* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-21 | 25 | 83 | 2 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 3e-21 | 22 | 83 | 2 | 64 | ATERF1 |
3gcc_A | 3e-21 | 22 | 83 | 2 | 64 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006449389.1 | 1e-179 | ethylene-responsive transcription factor 4 | ||||
TrEMBL | V4W8U7 | 1e-177 | V4W8U7_9ROSI; Uncharacterized protein | ||||
STRING | XP_006449389.1 | 1e-178 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44210.1 | 7e-29 | erf domain protein 9 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10016463m |
Entrez Gene | 18051602 |