PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10016427m | ||||||||
Common Name | CICLE_v10016427mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 246aa MW: 28189 Da PI: 10.0579 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 98.7 | 2.4e-31 | 28 | 78 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtf+kRrng+lKKA+ELSvLCdae+a+i+fss+g+lyeys+ Ciclev10016427m 28 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEIALIVFSSRGRLYEYSN 78 79***********************************************95 PP | |||||||
2 | K-box | 112 | 6.1e-37 | 96 | 192 | 4 | 100 |
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 s++ s +ea+a+ +qqe+akL+ +i+n+q+++R++lGe+L+ L++keL+++e++Lek++++iRskKnell+++ie++qk+e +l++ n+ Lr+k Ciclev10016427m 96 SNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAK 189 4444599*************************************************************************************** PP K-box 98 lee 100 ++e Ciclev10016427m 190 IAE 192 986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.0E-42 | 20 | 79 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 33.978 | 20 | 80 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 6.65E-45 | 21 | 94 | No hit | No description |
SuperFamily | SSF55455 | 3.92E-33 | 21 | 92 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.2E-33 | 22 | 42 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 22 | 76 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.2E-26 | 29 | 76 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.2E-33 | 42 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.2E-33 | 57 | 78 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.2E-26 | 105 | 190 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.081 | 106 | 196 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0048440 | Biological Process | carpel development | ||||
GO:0048443 | Biological Process | stamen development | ||||
GO:0048497 | Biological Process | maintenance of floral organ identity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MAFPNELAAG REELSPKRKM GRGKIEIKRI ENTTNRQVTF CKRRNGLLKK AYELSVLCDA 60 EIALIVFSSR GRLYEYSNNS VKSTIDRYKK ATADTSNTGS ICEANAQFYQ QEAAKLRIQI 120 SNMQNSNRNM LGESLSGLNF KELKNMETRL EKGISRIRSK KNELLFAEIE YMQKREVDLH 180 NSNQLLRAKI AENERGQQNM NLMQGGSSYE IIQSQPFDSR SYFQVNALQP TNHYPRQDQM 240 ALQLV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 9e-21 | 20 | 88 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 9e-21 | 20 | 88 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_R | 9e-21 | 20 | 88 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_S | 9e-21 | 20 | 88 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_A | 9e-21 | 20 | 88 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_B | 9e-21 | 20 | 88 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_C | 9e-21 | 20 | 88 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_D | 9e-21 | 20 | 88 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_E | 9e-21 | 20 | 88 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_F | 9e-21 | 20 | 88 | 1 | 69 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ccl.3015 | 0.0 | fruit |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed exclusively in stamens and carpels. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00609 | ChIP-seq | Transfer from AT4G18960 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB218610 | 0.0 | AB218610.1 Citrus unshiu CitMADS1 mRNA for MADS-box protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006449577.1 | 0.0 | floral homeotic protein AGAMOUS | ||||
Swissprot | Q40885 | 1e-132 | AG_PETHY; Floral homeotic protein AGAMOUS | ||||
TrEMBL | Q05KK3 | 1e-180 | Q05KK3_CITUN; MADS-box protein | ||||
TrEMBL | V4TQL4 | 1e-180 | V4TQL4_9ROSI; Uncharacterized protein | ||||
STRING | XP_006449577.1 | 1e-180 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6181 | 22 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18960.1 | 1e-128 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10016427m |
Entrez Gene | 18053085 |
Publications ? help Back to Top | |||
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